Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04924 and BL00730
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:07
# Commandline: needle
# -asequence dna-align/BSNT_04924___yvqC.1.5803.seq
# -bsequence dna-align/BL00730___liaR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04924___yvqC-BL00730___liaR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04924___yvqC-BL00730___liaR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04924___yvqC
# 2: BL00730___liaR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 654
# Identity: 477/654 (72.9%)
# Similarity: 477/654 (72.9%)
# Gaps: 36/654 ( 5.5%)
# Score: 1727.5
#
#
#=======================================
BSNT_04924___ 1 GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCT 50
||||||||||||||.||.||||||||||||||||||||.|||||||||||
BL00730___lia 1 GTGATTCGAGTATTGTTAATTGATGATCATGAAATGGTGAGAATGGGGCT 50
BSNT_04924___ 51 CGCGGCTTTTTTGGAGGCGCAGCCCGATATTGAAGTCATCGGCGAAGCAT 100
.||.|||||..||||..|.|||||.|||||||||||.||.||.||.||||
BL00730___lia 51 GGCCGCTTTCCTGGAATCCCAGCCTGATATTGAAGTGATTGGGGAGGCAT 100
BSNT_04924___ 101 CGGACGG-CAGCGAAGGTGTTCGGC-TTGCTGCGGAACTGTCG------- 141
|.||||| .|||| |||| || |||.||.||
BL00730___lia 101 CAGACGGAAAGCG--------CGGCGTT------GAATTGGCGCTTGAAA 136
BSNT_04924___ 142 -----CCTGATGTCATTTTAATGGACCTTGTCATGGAGGGCATGGATGGC 186
||.||.||.|||||.|||||.|||||.|||||.||.|||||.||.
BL00730___lia 137 CCAAACCCGACGTGATTTTGATGGATCTTGTGATGGAAGGGATGGACGGA 186
BSNT_04924___ 187 ATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTAT 236
|||.|.||.||.||.|||||.||||||.|||||.|.||.||||||||.||
BL00730___lia 187 ATTGAGGCCACGAAACAAATATGCCGGCAGCTTGCCGATCCGAAAATCAT 236
BSNT_04924___ 237 TGTGCTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAG 286
.||.||.||.||||||.|||||||||||||.||.||.|||||.||.||||
BL00730___lia 237 CGTTCTGACGAGCTTCGTTGATGATGACAAGGTCTATCCGGTCATCGAAG 286
BSNT_04924___ 287 CTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAAAGCGGCAGAAATCGCC 336
|.||.||||||||||||.||.|||||||.||.||||||...|||||||||
BL00730___lia 287 CCGGAGCGCTCAGCTATTTGCTGAAAACGTCGAAAGCGAGTGAAATCGCC 336
BSNT_04924___ 337 GATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGT 386
|||||.|||.|.||.||.|||...|||||.||.|||||.||..|.|||||
BL00730___lia 337 GATGCGATCAGGGCTGCGAGCGTCGGAGAACCAAAGCTTGAAGCCAAAGT 386
BSNT_04924___ 387 GGCGGGAAAAGTATTATCCAGGCTGCGCCACTCA---GGTGAAAACGAGC 433
.||.||||||||.||.||||.||||.|.||.||| ||.||| .|||
BL00730___lia 387 CGCAGGAAAAGTGTTGTCCAAGCTGAGACATTCAGCCGGCGAA---CAGC 433
BSNT_04924___ 434 TCCCTCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTTCCTGATC 483
.||.||||.|||||||.|||..|.|.||..|.|||||.|||...||..|.
BL00730___lia 434 CCCTTCATCAATCGCTGACGGCAAGAGAATTGGAAATCCTCAAACTTGTA 483
BSNT_04924___ 484 GCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGAT 533
|||||.||.|||||||||||||..||.|.|||.|||.|.|.|||.||.||
BL00730___lia 484 GCAGAGGGCAAGACAAACAAAGGTATTGCCGAAGAATTATATATCACCAT 533
BSNT_04924___ 534 TAAAACAGTCAAAACACATATTACCAATATTTTATCAAAGCTGGATGTCA 583
|||||||||.|||||.|||.|.||.||.||..|.||.|||||.||.|||.
BL00730___lia 534 TAAAACAGTTAAAACGCATGTGACGAACATCCTTTCCAAGCTTGAAGTCG 583
BSNT_04924___ 584 GTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGT-GAA 632
..||||||||.||.||.||..|.|||||.||||||||..|.||.|| ||.
BL00730___lia 584 ACGACCGGACACAAGCCGCAATCTACGCCCACCGAAACAAACTTGTCGAC 633
BSNT_04924___ 633 TTAG 636
|.|
BL00730___lia 634 TGA- 636
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