Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04938 and BL00718

See Amino acid alignment / Visit BSNT_04938 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:07
# Commandline: needle
#    -asequence dna-align/BSNT_04938___yvrA.1.5803.seq
#    -bsequence dna-align/BL00718___yvrA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04938___yvrA-BL00718___yvrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04938___yvrA-BL00718___yvrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04938___yvrA
# 2: BL00718___yvrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1538
# Identity:     815/1538 (53.0%)
# Similarity:   815/1538 (53.0%)
# Gaps:         460/1538 (29.9%)
# Score: 1890.5
# 
#
#=======================================

BSNT_04938___      1 ATGA-TGAAGGCAGAAGGGCTGTCGGGAGGATACGGCGACAGCCGCCTAA     49
                     |||| |||.|.||...||| ||||.||.|||||.|  ||.|..||..|..
BL00718___yvr      1 ATGATTGATGTCATCCGGG-TGTCCGGCGGATATG--GAAAAACGGATGT     47

BSNT_04938___     50 TTAACA--ATGTCAGCTTAACCGTGGAGAAGGGAGAATTTCTCGGAATTC     97
                     .|.|||  ||.||||.||..|.||..||..|||.||||||.|.|||||||
BL00718___yvr     48 CTTACAGGATATCAGTTTTGCTGTAAAGCCGGGTGAATTTTTAGGAATTC     97

BSNT_04938___     98 TCGGCCCTAATGGAAGCGGAAAAACCACGCTTTTGC---ACTTGCTGACA    144
                     |.||.||.||.||.||||||||||||||   |||||   |..||.||.|.
BL00718___yvr     98 TTGGTCCGAACGGCAGCGGAAAAACCAC---TTTGCTGAAAATGTTGTCG    144

BSNT_04938___    145 GGTAC-GCTGCCGGCCAAGGAA--GGCAGGGTTTATCTGGCTGGAAAACT    191
                     ||.|| ..||||..||   |||  |||..|||   .|| |||.|||   |
BL00718___yvr    145 GGAACAATTGCCCCCC---GAAGCGGCGAGGT---GCT-GCTTGAA---T    184

BSNT_04938___    192 GC-------TGGCGGACTATAAACCGAAGGAACTGG--CGCAAATCATGG    232
                     ||       |.|.|||.||.|||.|||||||.||.|  ||||||  ||||
BL00718___yvr    185 GCCGTTCAGTCGGGGAGTACAAAACGAAGGAGCTCGCTCGCAAA--ATGG    232

BSNT_04938___    233 CTGTCCTGCCGCAAAAAACGGATCAAGCCTTCACCTTTACCGTCGAAGAA    282
                     |.|||||.||.|||||||||||.||.|||||..|||||||.||.||.|||
BL00718___yvr    233 CGGTCCTTCCTCAAAAAACGGAGCAGGCCTTTTCCTTTACGGTGGAGGAA    282

BSNT_04938___    283 ACTGTAGCCTTTGGCAGATATCCATTCCAAACGGGACTGTTCAGACAGCA    332
                     ||.|||...||||||.|.||..|.|..|||.|.||.||.||..|.||||.
BL00718___yvr    283 ACGGTACAGTTTGGCCGCTACGCGTATCAAGCAGGCCTTTTTCGGCAGCT    332

BSNT_04938___    333 GACTGAAAAGGATGAAG-CCAT-------TGTACAGGAAGCAATGGAGCA    374
                     |||      ||..|||| ||||       ||.|.|||  |..|||.||||
BL00718___yvr    333 GAC------GGCGGAAGACCATGATATCGTGAAGAGG--GTGATGAAGCA    374

BSNT_04938___    375 AACAG----GAGTGGCCGATTTTGCGCAAAAGCCGATTCGCGAACTAAGC    420
                     .||||    |..|.||    ||.||.|||||..|.||.|..||.||.|||
BL00718___yvr    375 GACAGACACGCTTCGC----TTCGCCCAAAAATCCATCCATGAGCTGAGC    420

BSNT_04938___    421 GGAGGGGAACAGCAGCGGGTGTATTTGGCACAAGCTTTGGCACAGCAGCC    470
                     ||.||.||.|||||||||||||||||.||.||.||..|.||.|||.|.||
BL00718___yvr    421 GGCGGAGAGCAGCAGCGGGTGTATTTAGCGCAGGCACTTGCCCAGGAACC    470

BSNT_04938___    471 GCGCATTTTATTT-----TTGGACGAGCCGACTAATTTTCTCGATCTGGC    515
                      ||.|   |||||     || ||.||.|||||.|.||||||||||.||.|
BL00718___yvr    471 -CGAA---TATTTGCTGCTT-GATGAACCGACGAGTTTTCTCGATTTGTC    515

BSNT_04938___    516 TTATCAAAAAGA-CCTGCTTGATCTGATCAAACGCCTGACGAGAGAAAGC    564
                     .|.|| |||||| .|||||||||.|.||.||||         .||||| |
BL00718___yvr    516 ATTTC-AAAAGAGTCTGCTTGATTTAATGAAAC---------AAGAAA-C    554

BSNT_04938___    565 GG----------ATTGGCGGCTGTCAGCGTTTTTCATGATCTGAACACCG    604
                     ||          |.|.||.|..|||.|.||.|||||||||.||||.|..|
BL00718___yvr    555 GGCTGCATCCAAACTCGCAGTGGTCGGGGTGTTTCATGATGTGAATATTG    604

BSNT_04938___    605 CAAGCCTGTACTGTGA---TGAGCTCATGTTTATGAAAA-ACGGTACCGC    650
                     |.||..|.||||||||   |..||||    .|||.|||| |.||.|    
BL00718___yvr    605 CGAGTTTATACTGTGACCGTCTGCTC----CTATTAAAAGATGGAA----    646

BSNT_04938___    651 CGGGCCTAAGCAAAA-----------ACCGGAA---------TATGCTGT    680
                            |||||.||           .||||||         |.||||| 
BL00718___yvr    647 -------AAGCAGAAGTTCTTGACCGCCCGGAAGCAGCTCTTTCTGCTG-    688

BSNT_04938___    681 CACAGAACAAAGCATAAAGGCG----------GTGTACGATACAGATGTC    720
                                       ||||          |||||.|||||.||..||
BL00718___yvr    689 ------------------GGCGCATCGGACGAGTGTATGATACGGACATC    720

BSNT_04938___    721 ACCGCCTTGGTACATCAAAGCTCA----CCTAAACCGATGATTGTGATTC    766
                     ||.|...|||..||||    ||||    .|.||.|||..|.||...|||.
BL00718___yvr    721 ACTGGACTGGACCATC----CTCAGCGTTCAAATCCGCAGTTTACAATTA    766

BSNT_04938___    767 AGCCTGAAAAAGAT--AGCGTGAAGCAGCAGTCTATC------------C    802
                     .|.| ||||||.||  .|||..||.|.| ||.|..||            |
BL00718___yvr    767 TGGC-GAAAAACATCCCGCGGAAAACCG-AGCCCCTCTTTTTAAAAGAGC    814

BSNT_04938___    803 CATTTGAAGCA----TTGCTCCAAGCGGGGCGTGATGACATTCTTCTGCA    848
                     .|.||||| ||    ||||..||       ||..||..|||| ||..|||
BL00718___yvr    815 GAATTGAA-CAATATTTGCCGCA-------CGGCATCGCATT-TTTGGCA    855

BSNT_04938___    849 AACGGAAATCCCGCTTCGAACAT-TGTCCTC--CACGCCTATCGGTGCAG    895
                     .||.|    ||||||.|| .|.| |||||||  .|             ||
BL00718___yvr    856 GACCG----CCCGCTGCG-GCTTCTGTCCTCAGAA-------------AG    887

BSNT_04938___    896 GG--TTTTCGTGGAGCAGGACGCTGATCCATAAACGGCTGCCAGATCAGC    943
                     ||  |||.|.||||    ||||         |||                
BL00718___yvr    888 GGGCTTTGCTTGGA----GACG---------AAA----------------    908

BSNT_04938___    944 CAGATCCGATAGAAGGACTTACGGCCTGTCTTTCAGAAAGCGGTTTTCAA    993
                                     |||||         |||..||.|||||...| ||
BL00718___yvr    909 ----------------ACTTA---------TTTTCGACAGCGGAAAT-AA    932

BSNT_04938___    994 CTGCAGGAGACGTGTGCG-ATGGCTTCTTCAGAAAGAC--TTGACCA---   1037
                     || |.|||    ||..|| ||||| ||.||||     |  ||||.||   
BL00718___yvr    933 CT-CTGGA----TGGCCGCATGGC-TCGTCAG-----CTTTTGAACAGGA    971

BSNT_04938___   1038 -----TTTCGTGTATCGAACAT----ATGAA-------------------   1059
                          |   ||.||||.|||||    .||||                   
BL00718___yvr    972 AACGCT---GTTTATCCAACATGATGCTGAATTGGCTGACTGCCATATTG   1018

BSNT_04938___   1060 -GACGGAGA---GTTATCCGTTTTCATATGCGTTC--------AGAC---   1094
                      |.||||.|   ||.|||  |||.|||   || ||        ||||   
BL00718___yvr   1019 TGTCGGAAAGCGGTGATC--TTTGCAT---CG-TCGGTATGAAAGACACG   1062

BSNT_04938___   1095 ---CGGCTTTTCG---ATTTGGATTTTGATTAACGGC--TATGC-GGCAG   1135
                        .|||.||| |   ||.|||.|.||..||.|||||  |.||| ||..|
BL00718___yvr   1063 ATGGGGCGTTT-GATCATGTGGGTGTTAGTTGACGGCTGTTTGCAGGATG   1111

BSNT_04938___   1136 ATCAATTCTTCATCAAGGCTCTTATGGCTGCCGAAGCAGAACGGACGA-A   1184
                     .||||||..|                            |||  |.||| |
BL00718___yvr   1112 GTCAATTTGT----------------------------GAA--GGCGATA   1131

BSNT_04938___   1185 AGTGCTGGGAGACGGAA------GAGGCACAG----------------GT   1212
                     ||.||||     |||.|      |..||.|||                ||
BL00718___yvr   1132 AGCGCTG-----CGGCATTTGCCGCAGCCCAGCATCATGTTCCGTGTAGT   1176

BSNT_04938___   1213 GATATTCTCATCGCCGCGACTCAAAC-------TCAGC-AATCCGAAAAC   1254
                     |||.|.||..|.||.||.||||||.|       ||||| .|||   ||| 
BL00718___yvr   1177 GATGTCCTTGTAGCGGCCACTCAATCCGGCCGGTCAGCGGATC---AAA-   1222

BSNT_04938___   1255 ATAGAACAGCGGC-----TGA-ACCAATTGATAAAGAAAGGGACAGCTGA   1298
                              |.||     ||| ||.||||.| |||.|||   |||||.|.
BL00718___yvr   1223 ---------CCGCTTTTTTGACACAAATTCA-AAATAAA---ACAGCCGC   1259

BSNT_04938___   1299 ATGTATAAAAGAGGCTGCTGAGTTGTTT----GAATAA   1332
                     .|||.|.||||             .|||    ||.|||
BL00718___yvr   1260 TTGTGTGAAAG-------------CTTTAAAAGATTAA   1284


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