Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04939 and BL00716
See
Amino acid alignment /
Visit
BSNT_04939 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:08
# Commandline: needle
# -asequence dna-align/BSNT_04939___yvrB.1.5803.seq
# -bsequence dna-align/BL00716___yvrB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04939___yvrB-BL00716___yvrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04939___yvrB-BL00716___yvrB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04939___yvrB
# 2: BL00716___yvrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1133
# Identity: 688/1133 (60.7%)
# Similarity: 688/1133 (60.7%)
# Gaps: 217/1133 (19.2%)
# Score: 2136.0
#
#
#=======================================
BSNT_04939___ 1 ------------------GTGAGCGTCATCTTAGGAATT-----TCTTGC 27
.||| ||| |.|||.|||.| |.||||
BL00716___yvr 1 TTGCTGAACATATTTACCCTGA-CGT--TTTTAAGAAATAACCGTTTTGC 47
BSNT_04939___ 28 GGCA---GCCTGCATATTCCTATTCCCGCTGTTTTTCGTGTCTTTTGGCA 74
|||| ||||.|| .||.|||||||| |||| ||||
BL00716___yvr 48 GGCATATGCCTTCA---------GCCTGCTGTTTT---TGTC----GGCA 81
BSNT_04939___ 75 TCAAGGTT----TCGGCGGCTCTATCGGTTCT-----GAT---------- 105
|| .||| |.||...|||||||||.||| |||
BL00716___yvr 82 TC--CGTTCTTATGGGAATCTCTATCGGATCTTTGGAGATTCCCATTCCT 129
BSNT_04939___ 105 -------------------------------------------------- 105
BL00716___yvr 130 TCTATTATGAAGGTTTTTTTGGAAGAATGGTTTGGCATTCAAGGGTTAAA 179
BSNT_04939___ 106 ----GATCCGATGTACA----CTAATATTATGATGAATATCAGACTGCCG 147
|||||| ||| |.||.||.||.|||||.|||||.||.|||
BL00716___yvr 180 TCCCGATCCG----ACAGAGGCGAACATCATCATGAAAATCAGGCTCCCG 225
BSNT_04939___ 148 AGAGTTGTGCTGGCCGCCCTTGTGGGGGCGGCTCTTTCTATTGCAGGGGC 197
||.||.||..|||||||.|||||.||.||||.|||..||...||.||.||
BL00716___yvr 226 AGGGTGGTTTTGGCCGCTCTTGTCGGCGCGGGTCTGGCTGCCGCGGGAGC 275
BSNT_04939___ 198 CGCTTTTCAAGGATTGTTGAAAAATCCGCTTGCTGATCCCTATACGCTAG 247
||..|||||.||..|.||||||||.|||||.||.|||||.||||||||.|
BL00716___yvr 276 CGGGTTTCAGGGGCTCTTGAAAAACCCGCTCGCGGATCCATATACGCTTG 325
BSNT_04939___ 248 GTGTGTCATCCGGTGCTTCAGTCGGAGCTGTTGTGACTCTGTTCTTAGGT 297
|..|.||.||.||.||..|.|||||.||.||.||.||.|||||.||.||.
BL00716___yvr 326 GCATTTCGTCTGGCGCGGCCGTCGGTGCCGTGGTCACGCTGTTTTTTGGG 375
BSNT_04939___ 298 CTGCACCTTCCTGTCATCGGAGGGTTTACACTCCCGGTTGTGAGTGTAGC 347
.|.||.||.||.||.||||||.|.||||||||.|||.||.|.||.||.||
BL00716___yvr 376 ATTCAGCTGCCGGTGATCGGAAGTTTTACACTGCCGTTTTTAAGCGTTGC 425
BSNT_04939___ 348 CGCGGCACTTGCCACGA------TGGCGGCGGTCCTTT--TCTTCAGC-C 388
.|||||..||..|..|| ||| ||| |.||..|| |
BL00716___yvr 426 TGCGGCTGTTATCGTGATTTTTTTGG---------TTTTGTTTTTTGCGC 466
BSNT_04939___ 389 GCCTCGTTCATGCTTCGATGTCTGTTTCCACCCTCATTTTGACCGGTGTC 438
|.|||||.||..|||||.||.|..|.|||.|..|.|||||.||.||..||
BL00716___yvr 467 GGCTCGTACACCCTTCGTTGACCCTGTCCGCTTTGATTTTAACAGGGATC 516
BSNT_04939___ 439 ATCACCAACTCTTTTTTGGGCGCATTTATTTCTCTTATCATCGCCTTGAC 488
|||..||..||.||||||||.||..||||||||||.||.|||||.|||||
BL00716___yvr 517 ATCTTCAGTTCGTTTTTGGGTGCGCTTATTTCTCTCATGATCGCTTTGAC 566
BSNT_04939___ 489 AGGAGACAACCTGCTT-----CCGATTGTGCATTGGCTGCTTGGCAGCGT 533
.||.|| ||.|| |||||.||.||.||||||||.||.|||||
BL00716___yvr 567 CGGCGA-----TGATTTAAAACCGATCGTCCACTGGCTGCTCGGGAGCGT 611
BSNT_04939___ 534 CTCAATGAGGGGCTGGAGCTATGTTATTTTGTTTCTCCCGTTTTTT---- 579
.||.||||||||||||.|||||||....||||||||.||.||||||
BL00716___yvr 612 ATCGATGAGGGGCTGGGGCTATGTCGCGTTGTTTCTGCCCTTTTTTGCTG 661
BSNT_04939___ 580 --------------CTTTTGGGAACCATTTTATTGATTATAAACGGAAGG 615
|||||| ||.|.|||.|||
BL00716___yvr 662 CGGGCGCTGCCGCGCTTTTG------------------ATCAGCGGGAGG 693
BSNT_04939___ 616 GAACTGAACGTGATGACATATGGAGAAGATAAAGCAAAGCTTCTTGGAGT 665
||||||||.||||||||.|||||.||.||.|||||.|.|||.||.||.||
BL00716___yvr 694 GAACTGAATGTGATGACTTATGGCGAGGAAAAAGCGAGGCTGCTCGGCGT 743
BSNT_04939___ 666 CAGTGTTCAGCAGAGGAAGATGCTGA-----TTTTAATAGCCGGATCTCT 710
.|.|||..|||.|||.|| || | ||.|..|.||.|||.||.|
BL00716___yvr 744 GAATGTGAAGCGGAGTAA-AT----ATATCGTTCTGTTGGCGGGAGCTAT 788
BSNT_04939___ 711 TTTGACGGGAAGCGCTGTGGCAGTATCGGGTACGATTGGCTTTGTCGGCC 760
|||.||.||.||.||.||.||.||.||.||.||.|||||.||||||||||
BL00716___yvr 789 TTTAACCGGCAGTGCGGTTGCTGTGTCTGGAACCATTGGTTTTGTCGGCC 838
BSNT_04939___ 761 TTGTGATTCCGCATATCACAAGGCTTTTGTGGGGAACGGACCATCGGCAT 810
|.||.|||||||||.|.|...|||||.|||.|...|||||.||.||.|||
BL00716___yvr 839 TCGTCATTCCGCATTTTATCCGGCTTCTGTCGATTACGGATCACCGTCAT 888
BSNT_04939___ 811 TTACTGCCGCTGTCCGCCTTGCT---CGGGGCAGGGTTTCTCGTTTTAGC 857
.|.|||||||| |.|..|||| |||.||...|||.|||||..|..|
BL00716___yvr 889 CTTCTGCCGCT---CTCGATGCTGAACGGCGCTTCGTTCCTCGTGCTGTC 935
BSNT_04939___ 858 CGATCTGCTTTCCAGAACCATCATTGAGCCGATTGAACTGCCGATCGGGA 907
.|||||..|.||.||||||||.||.||||||...||.|||||||||||.|
BL00716___yvr 936 AGATCTTTTGTCGAGAACCATTATCGAGCCGTCCGAGCTGCCGATCGGCA 985
BSNT_04939___ 908 TCATTACGTCCTTGGCGGGAGCGCCTGTGTTC-GCTCTTATTTTAATTCG 956
|.|||||..|.|||...||.||.|||||.||| ||| ||||.||||||||
BL00716___yvr 986 TTATTACCGCATTGATAGGGGCACCTGTTTTCGGCT-TTATATTAATTCG 1034
BSNT_04939___ 957 GCAGC-ACCGCGGGGGGAGAAGCTTATGA---- 984
|| || ||||.||.|||.| ||.|.||||
BL00716___yvr 1035 GC-GCTACCGGGGAGGGCG-AGTTCATGATTGA 1065
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.