Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04940 and BL00715
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:08
# Commandline: needle
# -asequence dna-align/BSNT_04940___yvrC.1.5803.seq
# -bsequence dna-align/BL00715___yvrC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04940___yvrC-BL00715___yvrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04940___yvrC-BL00715___yvrC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04940___yvrC
# 2: BL00715___yvrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1014
# Identity: 687/1014 (67.8%)
# Similarity: 687/1014 (67.8%)
# Gaps: 132/1014 (13.0%)
# Score: 2218.5
#
#
#=======================================
BSNT_04940___ 1 ATGAAAAAACGAGCCGGG----ATATGGACTG-CGCTCCTGTTGGCT--- 42
|||||.| ||...|| .|||.| ||| ||||.|||||||||
BL00715___yvr 1 ATGAAGA----AGTTTGGGCTTTTATTG-CTGTCGCTGCTGTTGGCTGCC 45
BSNT_04940___ 43 ---GTTGTTATGCTGGCAGGCTGCGG-CAATCCTGCGGATCAGAAGGATT 88
||..||| || |||||||| ||| |||
BL00715___yvr 46 GGCGTCCTTA-----GC-GGCTGCGGCCAA----GCG------------- 72
BSNT_04940___ 89 CAAA----GGCAAA--ACAAAAAACA-------------GAAGTGTTCCC 119
|||| ||||.| |..||||||| ||||.|||.||
BL00715___yvr 73 CAAAAACCGGCAGACGAGCAAAAACAGGAGAAGGCGGCTGAAGCGTTTCC 122
BSNT_04940___ 120 TGTCACCATTGATGATGCGTC--GAACCAAGATGTAACCATCAAAAAAGA 167
.||||||||..|.|||||.|| || |||||.||.|..||..|||||||
BL00715___yvr 123 GGTCACCATAAAAGATGCCTCAGGA--CAAGAGGTCAAAATTGAAAAAGA 170
BSNT_04940___ 168 GCCAAAAAAGATTGTTTCATTAATGCCGAGCAACACAGAAATTACATACG 217
.||.||.||.||.||.||..|.|||||||||||.||.|||||||||||||
BL00715___yvr 171 ACCGAAGAAAATCGTCTCTCTGATGCCGAGCAATACCGAAATTACATACG 220
BSNT_04940___ 218 CACTCGGCCTTGGTGACAAAGTGGTCGGTGTCACCACAAAC-------GA 260
|.||||||||.||..|.|||||.|||||.|| .|| ||
BL00715___yvr 221 CCCTCGGCCTGGGGAAAAAAGTCGTCGGCGT-------GACGGATTTTGA 263
BSNT_04940___ 261 TACCTATCCAAAGGAAGTCAAAAAGGTTGAGAAAGTCGGAGATAT-GAAT 309
|||.||||||||.|||||.|||||.|||||.|||.||||.|..|| ||||
BL00715___yvr 264 TACATATCCAAAAGAAGTGAAAAACGTTGAAAAAATCGGGGGCATGGAAT 313
BSNT_04940___ 310 GTAA-ACGTTGAAAAAGTCATTTCTCTAAAACCAGATCTCGTTCTGGCCC 358
.||| ||| ||||||.|||||||..||||.||.||..|.||.|||||||
BL00715___yvr 314 TTAATACG--GAAAAAATCATTTCGTTAAACCCCGACTTGGTCCTGGCCC 361
BSNT_04940___ 359 ATGAGTCTTCCATGTCAGCATCAGCGGA-TGCC---------ATCAAACA 398
|.| |||| |||||| ||.|| |||| .|.||.||
BL00715___yvr 362 ACG---CTTC-----CAGCAT--GCAGAGTGCCGAAGAAGGGCTGAAGCA 401
BSNT_04940___ 399 GCTGAAAGACGCGGGCATTACAGTGCTGACTGTCAATGATGCACAATCAT 448
|||||||||.||.||.|||||.|||.|||||||.||||||||....||.|
BL00715___yvr 402 GCTGAAAGATGCAGGAATTACGGTGGTGACTGTAAATGATGCGGCCTCTT 451
BSNT_04940___ 449 TCTCCGAGGTGTACAAATCAATCGAAATGATCGGAGAAGCTGGCGGGGCG 498
|....|||..||||...||.|||||||||||||||.|.||||..||.||.
BL00715___yvr 452 TTGAAGAGACGTACCGGTCGATCGAAATGATCGGAAAGGCTGCAGGCGCA 501
BSNT_04940___ 499 GAGAAAAAAGC--CGATCAGCTCGTGAAAAGTATGAAATCAGATCTAAAG 546
|||.|..|||| |||.| ||.||.||.||.||||||||.||.|| |
BL00715___yvr 502 GAGGATCAAGCAGCGAGC--CTGGTCAAGAGCATGAAATCTGACCT---G 546
BSNT_04940___ 547 GAT---ATTCAAGAAAAAGCGAAAACCATTTCAAAAGACGAGGAGAAAAG 593
|.| ||..|||||||||||..|.||||.||.||||..||..|.||.|.
BL00715___yvr 547 GCTGGCATAAAAGAAAAAGCGGCAGCCATATCTAAAGCAGATCAAAAGAA 596
BSNT_04940___ 594 CGTATTTATCGAGGTTTCTCCTGATCCTGACATTTATACAACCGGAAAAG 643
.||||||.||||.||.|||||.|.|||.|||||||||||.||||||||||
BL00715___yvr 597 AGTATTTGTCGAAGTGTCTCCGGCTCCGGACATTTATACGACCGGAAAAG 646
BSNT_04940___ 644 ATACGTTTATGAATGAAATGC-TGAATGTCATCCATGCTAAAAACGCAGC 692
..||.|||||||||||||||| |||| |..||||||||..||||.||.||
BL00715___yvr 647 GCACCTTTATGAATGAAATGCTTGAA-GCGATCCATGCGGAAAATGCTGC 695
BSNT_04940___ 693 TGCGGATCAGACAGGATGGGTGCAA-ATGACAGACGAGGCGATCGTAAAA 741
|.|.|..||||.|||.|||| .||| ||.||.||.||.||||||||.||.
BL00715___yvr 696 TTCCGCGCAGAAAGGCTGGG-CCAAGATAACGGAAGAAGCGATCGTCAAG 744
BSNT_04940___ 742 CTCAATCCTGATGCAATTGTTACAACGGACGGTG-------TGAAAGCGA 784
||.|||||.|||||.||.||.||.||..||||.| ||..|||||
BL00715___yvr 745 CTGAATCCCGATGCGATCGTGACGACAAACGGCGAATCCGCTGTCAGCGA 794
BSNT_04940___ 785 AAGCTGTGGAAAAACGCGA-TGGCTGGAGCGAAATCAATGCTGTGAAACA 833
|| |..||||||| || .||||||||||...||||.||.||.|||.|
BL00715___yvr 795 AA----TTAAAAAACG-GAGCGGCTGGAGCGGTGTCAAAGCCGTCAAAAA 839
BSNT_04940___ 834 TCATCGTGTATATGATGTGGACCCTGATCTTGTGACACGTTCCGGTCCCC 883
|.||...|||||.||.|||||||||||.||.|||||.|||.|.||.||.|
BL00715___yvr 840 TAATGAAGTATACGACGTGGACCCTGACCTCGTGACCCGTCCGGGGCCGC 889
BSNT_04940___ 884 GTCTGATCGAAGGGGTCGAAGAACTTGCGGAAAGCATTTACCCGGATACG 933
|..|||||.|||||||||||||.|||||.|||...||||||||.| |||
BL00715___yvr 890 GATTGATCAAAGGGGTCGAAGAGCTTGCTGAACATATTTACCCTG--ACG 937
BSNT_04940___ 934 --TTTAAAGAATAA 945
|||||..|||||
BL00715___yvr 938 TTTTTAAGAAATAA 951
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