Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02097 and BL00710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:35
# Commandline: needle
# -asequence dna-align/BSNT_02097___exuR.1.5803.seq
# -bsequence dna-align/BL00710___exuR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02097___exuR-BL00710___exuR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02097___exuR-BL00710___exuR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02097___exuR
# 2: BL00710___exuR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1086
# Identity: 679/1086 (62.5%)
# Similarity: 679/1086 (62.5%)
# Gaps: 171/1086 (15.7%)
# Score: 1952.0
#
#
#=======================================
BSNT_02097___ 1 ATG---GTAACCATAAAAGATATCGCAAAACTCGCAAACGTATCCCACAC 47
||| |||||.||.|||||||||||.|..||.||.||.|||||.|||||
BL00710___exu 1 ATGTCAGTAACGATTAAAGATATCGCCAGGCTGGCGAATGTATCGCACAC 50
BSNT_02097___ 48 AACCGTTTCCAGAGCACTCAACAACAGCCCTTACATCAAAGAACATACGA 97
.||.||.||||||||.||.||||||||.||....||.|||||..|.||||
BL00710___exu 51 CACAGTATCCAGAGCGCTGAACAACAGTCCGCTGATAAAAGAGAACACGA 100
BSNT_02097___ 98 AGAAAAAGATATTAGAGCTAGCAGAGCAGC-----TCAACTATACACCAA 142
|.||.||.|||.|.|| ||..||||| |.||.||||.|||.|
BL00710___exu 101 AAAAGAAAATACTCGA-----CATCGCAGCCGAAATGAATTATAAACCGA 145
BSNT_02097___ 143 ATGTAAATGCGAAAAGTCTGGCGATGCAAAAGTCGCATACGATCGGGCTA 192
||.|.|||||||||||.||.|..|.|||||||||...|||||||||.||.
BL00710___exu 146 ATTTTAATGCGAAAAGCCTTGTCACGCAAAAGTCTTTTACGATCGGCCTG 195
BSNT_02097___ 193 TTCTTTACAAGCATTACAAACGGAACCTC-ACACAGCTTCTTTGCAGACA 241
||.||.||||||.|.|||.||||.||.|| .|| ||.|||||||||||||
BL00710___exu 196 TTTTTAACAAGCCTGACAGACGGGACGTCTTCA-AGTTTCTTTGCAGACA 244
BSNT_02097___ 242 -------CAATCAAAGGCGTCAATCAAGCCATAAGTGA-GGAT------T 277
| |||||||| |||| |||| .||| |
BL00710___exu 245 TCCTGCGC-------GGCGTCAA-CAAG------GTGATCGATGAAAACT 280
BSNT_02097___ 278 ACAATCTGTATGTGCGCGGCATTGATGAT----CTGAAAAACTATGAC-T 322
|.|||.||..|||..|.||.||.||.||| .||| |.||.| |
BL00710___exu 281 ATAATATGGTTGTCAGGGGAATCGACGATTATCATGA-----TTTGTCAT 325
BSNT_02097___ 323 CCGTTACACCG-ATGAGATATGACGGCATCATTTTAATGAGCCAAAGTG- 370
||.|| ||||| |...|.|||||||||||.||||||||.||||||||.|
BL00710___exu 326 CCATT-CACCGCAACCGCTATGACGGCATGATTTTAATCAGCCAAAGCGA 374
BSNT_02097___ 371 ACATTGATAATTCTTTTATTTACCATATTCGCGAAAAAAACATTCCGCTT 420
||| .|||.|..||||||||.|.|||.|.|.|.||.|.||.||||||.|.
BL00710___exu 375 ACA-GGATCAGGCTTTTATTGAGCATGTCCTCAAACAGAATATTCCGGTC 423
BSNT_02097___ 421 GTCGTGCTGAATCGTGATATTGATGATCGCACCATCACG-----AATATT 465
|||||||||||..|..|.||.|| |..|||| || || |||||.
BL00710___exu 424 GTCGTGCTGAACAGAAAAATCGA--AGGGCAC--TC-CGTTGTCAATATA 468
BSNT_02097___ 466 TTGTCCAATGACAAGGAAGGC-----TCTCAAGAAGCTGTAGAATACTTC 510
.||.|.|||||..|.||.||| .||| ||||....||||||.
BL00710___exu 469 CTGGCGAATGAACACGAGGGCGCTTTCCTC-----GCTGCTTCATACTTG 513
BSNT_02097___ 511 ATTCAGTCCGGCCATCAAGACATCGCCATCATCGAGGGGATCGAAGGCTT 560
||..|...||||||..||.|.||||||||..|..||||||..||||||||
BL00710___exu 514 ATCAAAAACGGCCACAAACAGATCGCCATGGTGCAGGGGAAAGAAGGCTT 563
BSNT_02097___ 561 TAAATCCTCCCAGCAGCGAAAGGA----AGGCTACTTATCT----GCACT 602
||||||.||.|| .||||||| |||| |.||| ||.||
BL00710___exu 564 TAAATCGTCTCA----AGAAAGGAAAGGAGGC----TTTCTTCGCGCGCT 605
BSNT_02097___ 603 ----GATTCAA--CATCATAT-TCCGATCAAGCATGAATACAGTGTCAAA 645
||.|||| |.|.|||| .||| || ||||||...||..||
BL00710___exu 606 TCGCGACTCAAACCTTGATATGCCCG-----GC--GAATACCTCGTTCAA 648
BSNT_02097___ 646 GGACAGTACGAT------ATGGAAAGCGGCTTTCAAGCGATGGAGAGGCT 689
|| |||| |||.||||||||||||..|||...||.|.|||
BL00710___exu 649 GG------CGATTATACGATGCAAAGCGGCTTTCGCGCGGCTGAAACGCT 692
BSNT_02097___ 690 GCTGGCACTGCCGAATCCTCCAACCGCTGTTTTTTGTTCGAATGATGACA 739
|||....|||..|||||||||.||.||..|.|||||..|.||||||||.|
BL00710___exu 693 GCTAAAGCTGAAGAATCCTCCGACAGCCCTGTTTTGCGCCAATGATGATA 742
BSNT_02097___ 740 TGGCAATCGGAGCGATGAATGCGATATTCGCAAAGGGCCTGCGCGTTCCT 789
||||.|||||.||||||||.||..|.|..|||||.||....|||..||||
BL00710___exu 743 TGGCGATCGGCGCGATGAACGCCCTCTATGCAAACGGGAAACGCTGTCCT 792
BSNT_02097___ 790 GATGATATTTCGGTGATCGGGTTTGATGATATTGGGTTTTCACAGTACAT 839
||..||||.|||.|.|||||.|||||.||||..||.|||||...|||.|.
BL00710___exu 793 GACAATATGTCGATTATCGGCTTTGACGATAGCGGATTTTCGGCGTATAC 842
BSNT_02097___ 840 CACGCCAAGACTTACAACAGT----AAAGCGCCCAGTGGAGAAAATCAGC 885
.||.||...|.|.||.||.|| |||.||.| .||.|||||||||
BL00710___exu 843 GACACCGTCATTGACGACGGTAAAAAAACCGAC----TGAAAAAATCAGC 888
BSNT_02097___ 886 GTGCTCGGTGCGCAAAAACTCTTGTCTCTGATCAGCGAGCCCGAAA---C 932
.||||.||||||.|||..||..||||..|||| ||||| |
BL00710___exu 889 ATGCTTGGTGCGGAAAGCCTGCTGTCATTGAT---------CGAAAACCC 929
BSNT_02097___ 933 AAAAGCAGAA-------AAA-----ATCTTGGAAAACACAAAATTCATGG 970
..|.|||||| |.| ||| |.|||..|..|.||..
BL00710___exu 930 GCAGGCAGAAGGCGGGCAGACGCTCATC------AGCACGGAGCTGATCA 973
BSNT_02097___ 971 TGCGTGATTCAGT----CAGACGATTGACGACGTGA 1002
|.||..||||||| || .|.||.|
BL00710___exu 974 TTCGCAATTCAGTTAAGCA-TCTATAG--------- 999
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