Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04947 and BL00707
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:08
# Commandline: needle
# -asequence dna-align/BSNT_04947___yvrG.1.5803.seq
# -bsequence dna-align/BL00707___yvrG.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04947___yvrG-BL00707___yvrG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04947___yvrG-BL00707___yvrG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04947___yvrG
# 2: BL00707___yvrG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1914
# Identity: 1200/1914 (62.7%)
# Similarity: 1200/1914 (62.7%)
# Gaps: 327/1914 (17.1%)
# Score: 3348.0
#
#
#=======================================
BSNT_04947___ 1 ATGAGGTTAAGATGGAAGTTTTTGTTTCACTTTTTCGGCCAGA---TGCT 47
||||.|.|.|||.|.|||.|..|..|.||||||.||.|.|||| |..|
BL00707___yvr 1 ATGAAGCTCAGAGGAAAGCTCGTTCTCCACTTTGTCAGTCAGATTTTTTT 50
BSNT_04947___ 48 GATTGT-GATCCTGCT-------GCTTACGGTTATGCTTGTTGCGTCGTT 89
||||.| |.||.||.| .|||.|.|||||.|| ||.||
BL00707___yvr 51 GATTCTCGGTCTTGTTCTCGCGACCTTGCTGTTATCCT-------TCATT 93
BSNT_04947___ 90 TTTCTATTTAGACGC---CCGTTTTAGCGATGCG-GAATCCAATTCAGGG 135
|||.| ||| |||.||.||||| |.| |||.|..||.||||.
BL00707___yvr 94 TTTTT-------CGCTCTCCGATTAAGCGA-GAGCGAAGCGGATACAGGC 135
BSNT_04947___ 136 CTGACGAAAGCAACGACCGACACACTTGA------GGCATATC----TCG 175
.||.|.|||||.||..|.|||||..|||| || || |.|
BL00707___yvr 136 TTGGCAAAAGCCACTTCAGACACGTTTGAAAGCTGGG----TCAGCGTGG 181
BSNT_04947___ 176 ATGTAAACGAAGACGGGACA--TGGGAAGTGGATAATTTCCTGAAGAAAT 223
||| || ||.| ||| |||.|..|.||..||.||.| |||||
BL00707___yvr 182 ATG---AC-AATA----ACAATTGGCAGATCGAAGATATCTT---GAAAT 220
BSNT_04947___ 224 ---CTGTTGATAAACAGCACGGCTGGATGCAAATCATT-GATTCGG-AAG 268
||.|.||.||||||...||||||.|.||||| ||| || ||| |||
BL00707___yvr 221 CGGCTATCGACAAACAGGGAGGCTGGCTTCAAAT-ATTAGA--CGGCAAG 267
BSNT_04947___ 269 GA-AACACTGATTATTCCTACGG----CGTGCCAAAAGACGTGCCG-GGC 312
|| ||.||.|.||||||||||.| |.|||..||| |.|.| |||
BL00707___yvr 268 GAGAAAACCGTTTATTCCTACCGTCTTCCTGCGGAAA----TTCAGAGGC 313
BSNT_04947___ 313 ACCTATAC--CAAGAAAGAGCTTTTGTC---TATTTATAAAACCAAAAAG 357
| .||| ||.|.||||.||..|.|| |.||.|||| ||||||
BL00707___yvr 314 A---GTACCACAGGGAAGACCTGGTATCCGTTTTTGATAA----AAAAAG 356
BSNT_04947___ 358 -CTTCATAACTATAAACTGAATTATTGG---GCCA---TCAATATTGAAG 400
.||.|.||.|||.||.|.||.|..||| |||| |||||..|||||
BL00707___yvr 357 AATTAAAAAATATCAAGTCAACTTCTGGTCTGCCAATTTCAATGGTGAAG 406
BSNT_04947___ 401 A-TAAGTCGT-ATCTTCTATTGTCCGGCTGGAAATCAAAAAGTGA-ACAG 447
| || ||| | ||.|||| |||.|||.|.||.|||||.|| || |
BL00707___yvr 407 ACTA---CGTGA--TTTTATT---CGGATGGGAGTCGAAAAGCGATAC-G 447
BSNT_04947___ 448 CTCCTGACTTCC--GTTGAAAAGCGTGAACAAAAGATAGACTCACTAGCG 495
.||||| ||| .|||.||| ||.||.|||..|| ||..|
BL00707___yvr 448 ATCCTG---TCCTATTTGGAAA-----AAGAAGAGAAGGA-----TATGG 484
BSNT_04947___ 496 CA-----------CTATAAGTCTAGTACCATCGACTATATTAAACGGAAA 534
|| ||||||....||.||..|.||.|..||||| ||||
BL00707___yvr 485 CAGACCTTTCTTCCTATAAAAAAAGCACGCTTGATTTCATTAA---GAAA 531
BSNT_04947___ 535 ---AAAGGCGCCATTTACCTGTTAGACAGC----AATGGAAAGATTCTCG 577
|||||..||.|.||..|||| |||| ||.||||| ||.||.|
BL00707___yvr 532 AACAAAGGGTCCGTCTATTTGTT---CAGCGAAAAAGGGAAA-ATGCTGG 577
BSNT_04947___ 578 ACAGCATCAAT-----AGCACA-----AAAAGCGAAAGAAAAACGATGAA 617
|| ||.|| ||.||| .|.|||.|..|| ||.||
BL00707___yvr 578 AC----TCGATCTACCAGGACATAGATTACAGCCAGGGA------ATCAA 617
BSNT_04947___ 618 CCAGCTGGAGCTGCTTAAATACAGCTCTAAGCCTTGGAACTATAAGCGGG 667
..||||||||||..|.||||||.|.||.|||||.||||||||..|||..|
BL00707___yvr 618 TGAGCTGGAGCTTTTAAAATACGGATCAAAGCCATGGAACTACGAGCACG 667
BSNT_04947___ 668 AAATTTC-------CG-TTAAGATCCTCAATAAAGACAG-ATG---GATG 705
|..|||| || |||||..| ||||| ||| |||.
BL00707___yvr 668 AGTTTTCATACAGGCGATTAAGCGC---------GACAGAATGGCTGATC 708
BSNT_04947___ 706 GTCGCTACGGTGCCAAACCC-AGTCTATGTAA--CCGATCAGGAGTTTAA 752
|.|||||| |||.||||| | |.|.||| |.|||||.|||||.||
BL00707___yvr 709 GCCGCTAC---GCCGAACCCGA---TTTTTAATCCGGATCATGAGTTCAA 752
BSNT_04947___ 753 CA----AATCATTCCTGAAGGTTGTATTAAAAGCGATGTTTC---TCGTG 795
|| .||.|| |.| |.|.|..|||||| ||..||| |||||
BL00707___yvr 753 CAGGACGATGAT--CGG--GCTCGCTTTAAAA---ATCGTTCTCATCGTG 795
BSNT_04947___ 796 ATGGCCGTTTTGTTC--ATGTATATCATTTGGATGACCGTTTGGTATATG 843
||.|.||||.||.|| ||..||.|| ||..||||||.||||||||...
BL00707___yvr 796 ATCGGCGTTCTGATCTTATTGATGTC--TTCTATGACCATTTGGTATTCT 843
BSNT_04947___ 844 TTCCGATTCGGGCTGCCGATTTTTCACACGATTAGATGGCTGGTCAATCT 893
|||.|||||||..|||||||..|.||.|||||||.||||.|.|||||.||
BL00707___yvr 844 TTCAGATTCGGCATGCCGATCATCCATACGATTAAATGGATCGTCAACCT 893
BSNT_04947___ 894 GTCAAAAGGGAAGCTTGAGGAACCCAGAAACCGGGACGGCCGTCCTGTCA 943
.|||||||||....||||.|||||.|||||||||.|.|||||.||
BL00707___yvr 894 TTCAAAAGGGCGATTTGAAGAACCGAGAAACCGGAAAGGCCGCCC----- 938
BSNT_04947___ 944 GCAA------AAATAAAAAGGGAA---AAATCAAACAGCCGTACCGCTTC 984
||.| ||..|||||||||| | ||||||||||||||..|.
BL00707___yvr 939 GCGAAGCCGGAACAAAAAAGGGAAGCGA----AAACAGCCGTACCGGCTG 984
BSNT_04947___ 985 TTCGGTGAGATATTTGAATCAATGGATCAGCTGACTGAAACGCTGAGAAG 1034
|||...||..|.||||||||.|||||.||||||||.||||||||
BL00707___yvr 985 TTCACAGAAGTGTTTGAATCGATGGAGCAGCTGACGGAAACGCT------ 1028
BSNT_04947___ 1035 GGATAAAAG-------AAACAGAGAAAAAATCCAGGCGACAAGGGAAGAA 1077
||.||||| ||||.|..|.||||||||..||||..||||.|||
BL00707___yvr 1029 -GAAAAAAGACGAGCAAAACCGCAAGAAAATCCAAACGACCCGGGAGGAA 1077
BSNT_04947___ 1078 TGGATTGCCGGTTTGTCACATGACTTAAAAACACCGCTCAGCAGCATTTA 1127
|||||.||.||..|.||.||||||||||||||.||||||||||..|||||
BL00707___yvr 1078 TGGATCGCAGGGCTCTCCCATGACTTAAAAACGCCGCTCAGCACGATTTA 1127
BSNT_04947___ 1128 CGGCTACAGCATGATGCTCGAG--TCGAAGCAGTATGACTGGTCGCCGGA 1175
||||||||||||||||||.||| ||.|| |.|||||.|||||
BL00707___yvr 1128 CGGCTACAGCATGATGCTGGAGTCTCCAA--ACTATGAGTGGTC------ 1169
BSNT_04947___ 1176 AGAAGTGAAA------GAAATGGGGCAGGTTGTCAGAGAAAAATCTGAAT 1219
|.|||.|.|| |||||.||.||||...|.|.||||||.||.||.|
BL00707___yvr 1170 AAAAGAGGAAATCCGCGAAATCGGCCAGGCGATGAAAGAAAAGTCGGACT 1219
BSNT_04947___ 1220 ACATGTCTAAGCTGATTGAAGACTTAAATTTAACGTATCGGCTGAAAAAT 1269
|||||||..||||.||.||||||||.||.||.|||||..||||||||||.
BL00707___yvr 1220 ACATGTCACAGCTAATCGAAGACTTGAACTTGACGTACAGGCTGAAAAAC 1269
BSNT_04947___ 1270 GATGCTCTTCCTATT----GAGAGAAATCTCACT-AGCCTTATCCCGTTT 1314
||.|||.|.||.||| |..||| ||.| ||.||..|.||||||
BL00707___yvr 1270 GACGCTTTGCCGATTAAACGCCAGA-----CAGTGAGGCTCGTGCCGTTT 1314
BSNT_04947___ 1315 TTTAAAAATGTCATTGAGGATTTTAAGAAAAATCCGTTTTCTGAAGGCTA 1364
||.||.|...||.|||||||.||||||....||.|.|||||.|||||.||
BL00707___yvr 1315 TTAAAGAGCTTCGTTGAGGAGTTTAAGCGCCATTCATTTTCAGAAGGGTA 1364
BSNT_04947___ 1365 TGATATCTCGTTTGTATCCAAAGAAG-AGCATATTGAATTTGCCCTTGAT 1413
..|..|.||.||||.||.|||..||| || |||..||.||||| |||
BL00707___yvr 1365 CAACGTGTCTTTTGAATACAAGCAAGTAG-ATACCGAGTTTGC----GAT 1409
BSNT_04947___ 1414 -GA-AGCG--TGGTTCAGGCGCATATTAGAAAACCTCCTTGGGAATGCCG 1459
|| ||.| ||||||.|..|..|.||.|||||||||||.|..||.||||
BL00707___yvr 1410 AGACAGGGGCTGGTTCCGAAGAGTCTTGGAAAACCTCCTCGCCAACGCCG 1459
BSNT_04947___ 1460 TGAAGCACAACGGCAAAGGAACAGAGATTCAA-GTCATTCTGGA-----G 1503
|.|||||.|||...|||||.||.||.| |||| ||.||.||.|| .
BL00707___yvr 1460 TCAAGCATAACAAAAAAGGCACTGACA-TCAAGGTGATCCTTGAAGAATC 1508
BSNT_04947___ 1504 CAAACAAAAAATCATATATCTTTAAAGGTGAAGGACAATGGGAAAGGAAT 1553
|||.|||.|.||.|| ||||.||| |..|.|||||.||.|.|||.||
BL00707___yvr 1509 CAAGCAATATATTAT---TCTTAAAA--TTCAAGACAACGGAAGAGGCAT 1553
BSNT_04947___ 1554 GGATGAAGAAACGATCACCCATTTGTTTAACCGTTACTACAGAGGGACGA 1603
|||....|||||..||.|..||||.||.|||||.||||||||.||.|||.
BL00707___yvr 1554 GGACTCTGAAACCGTCTCAAATTTATTCAACCGCTACTACAGGGGAACGC 1603
BSNT_04947___ 1604 ACACAAAAGATTCAACTGCCGGAACGGGTCTCGGGCTCGCGATTGCCAAG 1653
|.|||||||||.|.||.|..||||..||||||||.||.||.|||.|...|
BL00707___yvr 1604 ATACAAAAGATGCGACAGAAGGAAGCGGTCTCGGCCTTGCTATTTCTTTG 1653
BSNT_04947___ 1654 GAGCTTGTCCATCTGCATAACGGAACGATACAT----GTGAACAG----- 1694
||.||||||||.|||||..||| |.|.||| ||..||||
BL00707___yvr 1654 GAACTTGTCCACCTGCACGACG----GCTGCATCGCAGTTGACAGCCGGA 1699
BSNT_04947___ 1695 CAGAATGAACATTGGAACGGTCATTACCATCCTTTTTA--AAAAAC---- 1738
|||...|| ||.||||..|||||.||....|||| ||||||
BL00707___yvr 1700 CAGGCCGA-----GGGACGGAAATTACGATGGAATTTAAGAAAAACCCTA 1744
BSNT_04947___ 1739 ---------AATAA 1743
|||||
BL00707___yvr 1745 AAGCCGCCAAATAA 1758
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