Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02796 and BL00692
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:33
# Commandline: needle
# -asequence dna-align/BSNT_02796___ymaB.1.5803.seq
# -bsequence dna-align/BL00692___ymaB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02796___ymaB-BL00692___ymaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02796___ymaB-BL00692___ymaB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02796___ymaB
# 2: BL00692___ymaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 638
# Identity: 470/638 (73.7%)
# Similarity: 470/638 (73.7%)
# Gaps: 37/638 ( 5.8%)
# Score: 1617.5
#
#
#=======================================
BSNT_02796___ 1 ATGGGAAAAATGGACGAAATGATTTTAGTTGCCCCGCGCGATGATGTGTT 50
||||||||||||||||||||||||.|.||.|.||||||.||..|.||.||
BL00692___yma 1 ATGGGAAAAATGGACGAAATGATTCTCGTGGTCCCGCGGGAAAACGTATT 50
BSNT_02796___ 51 TAAGAAAGAAA-GCTTAACCTTCCAGGGCGTGTACAGTGAAGATAGCAGA 99
|...||.|||| || |.||||||||.|||||..||||.||.|.| .|||
BL00692___yma 51 TGCAAATGAAACGC-TGACCTTCCAAGGCGTCAACAGCGACGGT--GAGA 97
BSNT_02796___ 100 GTAGCCG--AAATCATGGCTCAGATTGAAGCGGC-CTATC-GTGAAATGA 145
..|.|.| |.||||||||.||.|||||| ||.| || || |||||||||
BL00692___yma 98 CGATCGGGAAGATCATGGCGCATATTGAA-CGCCACT-TCAGTGAAATGA 145
BSNT_02796___ 146 GAAGAGGGGACGCAGAAGAAGATCC-GCGTTTCAAGCAGCCGATACCTTA 194
||||.||.|||||.||.|||||||| ||.||| ||.||||||||.|||||
BL00692___yma 146 GAAGGGGAGACGCCGAGGAAGATCCTGCATTT-AAACAGCCGATCCCTTA 194
BSNT_02796___ 195 TGTCGTCATTAAGCGTGAAGATGAAGTTTTTCTTTACGAGCGGCTGGCTG 244
|||.|||||.||..|.|||||.|||.|.|||.|.||.||||||||.|..|
BL00692___yma 195 TGTTGTCATCAAAAGAGAAGACGAAATATTTGTATATGAGCGGCTCGAAG 244
BSNT_02796___ 245 GCGGCGGTGAATCACGACTGCACAACAAGCTTTCTCTCGGCTTTGGCGGT 294
||||.||.|||.|.||.||.|||||||||||.||.||||||||.|||||.
BL00692___yma 245 GCGGAGGGGAAGCGCGGCTTCACAACAAGCTGTCACTCGGCTTCGGCGGA 294
BSNT_02796___ 295 CATATGAAC---GCCATCGAAGGGGCAGCTTCA-TTTGCTGA-AGTCTTA 339
||.|||||| || |||||| ||||.| |||.|.|| |.|| |.
BL00692___yma 295 CACATGAACTTTGC---CGAAGG----GCTTGACTTTCCCGATATTC-TG 336
BSNT_02796___ 340 AAGCTGAACACAGACCGTGAGCTTGAGGAAGAACTGCAAATAAATGAAGA 389
|||.||||.||||||||.||.|||||.|||||.||.|.|||..|.|||..
BL00692___yma 337 AAGTTGAATACAGACCGCGAACTTGATGAAGAGCTTCTAATCGAGGAATC 386
BSNT_02796___ 390 AGATAAACAGGCGATTGTCACACTGGGATTGATCAATGATGATGAAAATA 439
||.||||.|....||.||.||.||.|||.||||.||||||||||||||.|
BL00692___yma 387 AGCTAAAGAAAAAATGGTGACGCTCGGACTGATTAATGATGATGAAAACA 436
BSNT_02796___ 440 GTGTTGGCAAAGTGCATATCGGTATTCTTTCTGCGCTTCAATTAAAGCCT 489
|.||.||.|||||.||||||||.||.|||||.||||||.|||||||.||.
BL00692___yma 437 GCGTCGGGAAAGTACATATCGGAATCCTTTCAGCGCTTGAATTAAAACCG 486
BSNT_02796___ 490 GGCGCACAAGTGGAAGTGAAGGAGAAAGAACAAATTGCGGGTAAATGGAT 539
||||||||.||.|||||.||.||.||.||.||.|||||.||....|||||
BL00692___yma 487 GGCGCACACGTTGAAGTCAAAGAAAAGGAGCAGATTGCCGGCCGTTGGAT 536
BSNT_02796___ 540 GAAAG-----TTTCTGAATTAAAACAGGATGACATCTACAACCGTCTGGA 584
||||| ..||||||..||||.|| |.||||..||.|.||.||
BL00692___yma 537 GAAAGCCAGTGATCTGAAAGAAAAAAG-----CGTCTATGACAGACTTGA 581
BSNT_02796___ 585 AACATGGTCACAGTTTGTTGTTGATATTCTT-GAATAA 621
|.|.||||||||||||||.||||||| |||| |..|||
BL00692___yma 582 ATCTTGGTCACAGTTTGTCGTTGATA-TCTTAGTTTAA 618
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