Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02079 and BL00688
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:33
# Commandline: needle
# -asequence dna-align/BSNT_02079___yjlA.1.5803.seq
# -bsequence dna-align/BL00688___yjlA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02079___yjlA-BL00688___yjlA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02079___yjlA-BL00688___yjlA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02079___yjlA
# 2: BL00688___yjlA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1097
# Identity: 635/1097 (57.9%)
# Similarity: 635/1097 (57.9%)
# Gaps: 250/1097 (22.8%)
# Score: 1658.5
#
#
#=======================================
BSNT_02079___ 1 ---------ATGAAAGCTAT------CGTTATCGGAATATTGGCTTCACT 35
|| ||| ||||.|.|.| |.||||
BL00688___yjl 1 GTGAGGCCGAT------TATACTGGGCGTTTTTGCA-----GCCTTC--- 36
BSNT_02079___ 36 TTTTTTCGCCGTTACCTTTATATTAAACAGAGCGATGGAGTTATCAGGAG 85
|||||.||..||||.||..|.||||||||.|||||||||.|...|||.|
BL00688___yjl 37 -TTTTTTGCTTTTACATTCGTTTTAAACAGGGCGATGGAGCTTGAAGGGG 85
BSNT_02079___ 86 GCAGCTGGCTTTGGAGCTCTTCGCTGCGCTTTATTTTTATGGTGCCGTTT 135
|.||||||.|.||||||.||||||||.|.|||||.||.||||.|||..||
BL00688___yjl 86 GAAGCTGGATCTGGAGCGCTTCGCTGAGATTTATCTTCATGGCGCCTCTT 135
BSNT_02079___ 136 TTATGTTTGATTGTCATC----------------ATG----AGAGGGACA 165
|||| |||.|||| ||| ||||
BL00688___yjl 136 TTAT------TTGCCATCGTTTGGCTTAGGGGGAATGTGAAAGAG----- 174
BSNT_02079___ 166 TTCACGCCTCTCTTACTAGAGATGAGGAAAAAGC------CGTTTTATTG 209
||.||.|..||.||.| ||||||| |.| |||
BL00688___yjl 175 ---------CTTTTTCAGGAAATTA--AAAAAGCGCCGGGCAT----TTG 209
BSNT_02079___ 210 GATCAAATGGAGCTTCGTCGGCTTCGTGCTTTTTTACGCGCCGATTACAT 259
|.|.|.|||||||.||.|||||||||..||.|||||.||||||.|....|
BL00688___yjl 210 GGTGAGATGGAGCATCATCGGCTTCGGTCTCTTTTATGCGCCGCTCTGTT 259
BSNT_02079___ 260 TTGCGGCTGCATACGGTCCGGGGTGGCTCATAGCCGGAACCTGGCAAATT 309
|||||||.||.|||||.|||||.|||||.||.||.|||||.||||||||.
BL00688___yjl 260 TTGCGGCGGCTTACGGACCGGGCTGGCTGATCGCGGGAACATGGCAAATC 309
BSNT_02079___ 310 ACAATTGTAGCCGGGGTGCTCTTATCTCCTTTGTTTTATG-------TCA 352
||.||..|..||||....|||||..|.||..|.||||||| |||
BL00688___yjl 310 ACGATCATTTCCGGTTCCCTCTTGGCGCCGCTTTTTTATGAAACCGTTCA 359
BSNT_02079___ 353 AACAAGATATGCCGGGC-GGTCCGCAGTTCGTTC--------GCCAAAAG 393
|||||.| .| ||||| |||.| |.||||
BL00688___yjl 360 AACAAAA--------ACAGGTCC------CGTACAGATAAGAGGCAAA-- 393
BSNT_02079___ 394 ATTCCCCT------GGTTTCAC-TTGGCACTTCCATGATCATCCTGATTG 436
||| ||| ||..|||| .|| ||..|.|||||..|.||.|
BL00688___yjl 394 ATT--CCTTATAAGGGGCTCACGATG-----TCGTTCATCATTTTAATCG 436
BSNT_02079___ 437 GAGCGGCTCTGATTC-AGCTTCAGCATGCAGAATCGCTTTCT----GGGA 481
|.|.|||.|||||.| ||| |.||||.||.|.|..||||||| ..||
BL00688___yjl 437 GGGTGGCGCTGATGCAAGC-TGAGCACGCGGCACAGCTTTCTTTGCACGA 485
BSNT_02079___ 482 GGATGCTGCTTTTCAGTGTGC----TGCCGGTTGTCATTGCGGCT---TT 524
|||||||| ||||| .|||||||.| ||| |||| ||
BL00688___yjl 486 -GATGCTGC-------TGTGCATCGCGCCGGTTAT-ATT--GGCTTCATT 524
BSNT_02079___ 525 TGCCTATCCGTTAGGAAACAGGAGAATGCTCGAAGAATACGGAGGCCGGC 574
|||.||||||.|.||.|||||.|.||||.|.||||..|.||..||.||.|
BL00688___yjl 525 TGCTTATCCGCTTGGGAACAGAAAAATGATGGAAGTTTGCGCCGGGCGCC 574
BSNT_02079___ 575 TTGATACATTTCAGCGCGTGCTTGGAATGACATTGGCAAGCCTTCCATTC 624
|.|||.|.|.||||||.||..|.||.|||||..|||||||||||||.||.
BL00688___yjl 575 TCGATGCTTATCAGCGGGTATTGGGGATGACGCTGGCAAGCCTTCCGTTT 624
BSNT_02079___ 625 TGGCTTATATTAGCAGCT-TAC-GGCTGG--TGGTCAGACG-GCCTTCCA 669
|||||.||..|..| ||| ||| |||||| |.|.|||..| || |||
BL00688___yjl 625 TGGCTGATCCTCTC-GCTGTACGGGCTGGCATCGGCAGGTGCGC---CCA 670
BSNT_02079___ 670 ACAG----CAAGCCAAACCGTTCAATCCTTTA----TCGTAGCCGTCAGC 711
.|.| ||||.|| ||||.|| | |.||.||.||....
BL00688___yjl 671 GCCGGGGACAAGTCA-----TTCAGTC----AGGATTGGTGGCTGTATTT 711
BSNT_02079___ 712 TCAGGCATCAT-TGCGACGGTTTTATTTTTCTG-GGCCACTGATATGGTA 759
||.||.|| || .|||||.||..|.||.|| || .||.||.|||.|.|||
BL00688___yjl 712 TCCGGAAT-ATGCGCGACTGTGCTGTTCTT-TGCCGCAACAGATCTTGTA 759
BSNT_02079___ 760 AGAGACAATCCGCAAAAACTCGCAGCCGTTGAAGCCACTCAATCCGGTGA 809
|.||...||..||..|||.|.||.||.|||||.|||||.|||||...|||
BL00688___yjl 760 AAAGGGGATATGCGCAAATTAGCGGCTGTTGAGGCCACACAATCGTTTGA 809
BSNT_02079___ 810 AGTGATTTTCGCGTTGC--TTGGTGAAATTGTTCTGCTGTCAGG--CGTT 855
||||.|.||.||| || .||||||||||.|..|.||.||..| ||.|
BL00688___yjl 810 AGTGCTGTTTGCG--GCCGCTGGTGAAATTTTAATCCTATCGAGTCCGCT 857
BSNT_02079___ 856 T-----TCCCATCTCTTTTATC--ATTTGCCGGT-TTGTTCATTATAATA 897
| |.|||||||.|..|.| |.|.|| | ||| |.|||||
BL00688___yjl 858 TCCCGGTGCCATCTCATGGAGCGGAATGGC---TCTTG-TGATTAT---- 899
BSNT_02079___ 898 GCGGGGATGATGTT--ACATAC---CTTCGCTTC-ACAGCCG-------- 933
.||.|||.|||| |||..| |.|||..|| |.|||||
BL00688___yjl 900 --CGGAATGGTGTTGAACAGCCATGCATCGAATCAAAAGCCGGCGGTTCA 947
BSNT_02079___ 934 -AG-AAAACCGAAAAAG---AAAGCACAGTCAAATCTGACTGCTTAG 975
|| |||.|.|.||||| ||
BL00688___yjl 948 AAGTAAAGCTGCAAAAGCATAA------------------------- 969
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