Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03286 and BL00676
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_03286___ypbQ.1.5803.seq
# -bsequence dna-align/BL00676___ypbQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03286___ypbQ-BL00676___ypbQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03286___ypbQ-BL00676___ypbQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03286___ypbQ
# 2: BL00676___ypbQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 559
# Identity: 334/559 (59.7%)
# Similarity: 334/559 (59.7%)
# Gaps: 107/559 (19.1%)
# Score: 850.5
#
#
#=======================================
BSNT_03286___ 1 ATGTTTTGGTTGTTGATCGCCATTCT---CATTGTT----CAAAGAGC-- 41
||||||||| .|.|||.| ||||.|| |..||.||
BL00676___ypb 1 ATGTTTTGG---------ACGATTTTAAGCATTTTTGCCGCCCAGCGCCT 41
BSNT_03286___ 42 -----AGCAGAAATGGCAGTGGCCAGGCAAAACGAACAAAAGG----TAA 82
||| |||||||.||.|.|...||||||.||||.| .||
BL00676___ypb 42 GCTTGAGC-----TGGCAGTCGCGAAGTTCAACGAAAAAAACGCTCTGAA 86
BSNT_03286___ 83 AGAAGCAAGGAGCAATTGAATTTGGCGAGA-GCCACTATCCGTATATCAT 131
|| |.|||||..|.||||..|| ||.| |.||.||.||.||.|||.|
BL00676___ypb 87 AG----AGGGAGCGGTCGAATACGG-GAAACGTCATTACCCTTACATCGT 131
BSNT_03286___ 132 TACGATGCATATCCTT--TTTTTCCTGTCCTTAATTGCCGAGGTG----- 174
..||||||||.| || ||||||.|.||.||.||| ||
BL00676___ypb 132 CGCGATGCATGT--TTCGTTTTTCGTATCTTTGATT-------TGGGAAA 172
BSNT_03286___ 175 ---CTGCTGATGAA---TAAACAGCCGTCCAGCTGGTGGCTCG--GTATC 216
|.|||..|.|| ..||| ||.||| |.||| .|||.| ||||
BL00676___ypb 173 CGACCGCTTTTCAACGCGGAAC--CCTTCC-GATGG-CGCTTGTCGTAT- 217
BSNT_03286___ 217 GCTG-CAG---TTATTTTAAGCGCACAGATCGTACGGTATTGGGCGCTTT 262
|| ||| |.||.|| |.|.|||.|..|.||||||||||||||.|
BL00676___ypb 218 --TGACAGGCCTCATCTT---CACGCAGGTTCTCCGGTATTGGGCGCTCT 262
BSNT_03286___ 263 GTTCCTTAGGGGCATATTGGAATACGAAAATCCTTGTTGTTCCAGGTGTA 312
.|||..|.|||..||..|||||.||||||||||||||..|.||.||....
BL00676___ypb 263 TTTCACTGGGGAAATGCTGGAACACGAAAATCCTTGTCATCCCTGGAACG 312
BSNT_03286___ 313 GAGCTTGTAAAAAAAGGTCCATATAAATGGATGAAACATCCAAACTAT-- 360
.|.|||||...|||.||.||.|||.|||||||.||||||||.||||||
BL00676___ypb 313 AATCTTGTCCGAAAGGGGCCCTATCAATGGATTAAACATCCGAACTATTT 362
BSNT_03286___ 361 -GCCGTTGTTATACTCGAAATTTTGTTGATTCCGCTGCTTTATCAAGCAT 409
||.||.|.| ||.|||.||.||.|..|.||.|||||||.|||.||||
BL00676___ypb 363 GGCGGTCGCT---CTTGAATTTCTGCTTTTGCCCCTGCTTTTTCAGGCAT 409
BSNT_03286___ 410 ACGTCACCATGTGTCTGTTTTCCATTT-------TCAATGCAGTGTTGTT 452
|||.|||| .|..|||| |||| ||||.|| ||.|||.
BL00676___ypb 410 ACGCCACC-----GCACTTTT--ATTTACGGTGCTCAACGC--TGCTGTC 450
BSNT_03286___ 453 AAG--CGTCAGAATTCGCGCAGAAGACAAAGCATTACAGGAA-TACAGCG 499
|.| |.||.|.|||||..|.|||||..|.||||||.|..|| ||||.|
BL00676___ypb 451 ATGTACATCCGCATTCGTACGGAAGAACAGGCATTAGAAAAATTACACC- 499
BSNT_03286___ 500 TAAAATAG- 507
||.|
BL00676___ypb 500 ----ATTGA 504
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