Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_03280 and BL00671

See Amino acid alignment / Visit BSNT_03280 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:57
# Commandline: needle
#    -asequence dna-align/BSNT_03280___ypcP.1.5803.seq
#    -bsequence dna-align/BL00671___ypcP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03280___ypcP-BL00671___ypcP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03280___ypcP-BL00671___ypcP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03280___ypcP
# 2: BL00671___ypcP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 922
# Identity:     658/922 (71.4%)
# Similarity:   658/922 (71.4%)
# Gaps:          65/922 ( 7.0%)
# Score: 2262.0
# 
#
#=======================================

BSNT_03280___      1 ATGAATAATAATAAACTATTGCTGGTTGACGGCATGGCTCTTTTATTCCG     50
                     |||   ||.||.||.||..||||.||.|||||.||||||.|.||||||||
BL00671___ypc      1 ATG---AACAAGAAGCTGCTGCTTGTAGACGGGATGGCTTTATTATTCCG     47

BSNT_03280___     51 GGCCTTTTTTGCCACGGCCGTACATCGCAACTTTATGATAAATGACAGCG    100
                     |.|.||||||||.||.||.||.||.|||||.||||||.|.|||||||..|
BL00671___ypc     48 GTCTTTTTTTGCGACTGCGGTGCACCGCAATTTTATGCTGAATGACAAAG     97

BSNT_03280___    101 GGGTGCCGACGAACGGCGTCAACGGCTTTTTAAAGCATTTGATTACAGCT    150
                     |.||||||||.|||||.||..||||.||||||||||||.||.|.||.|||
BL00671___ypc     98 GCGTGCCGACAAACGGGGTTCACGGTTTTTTAAAGCATCTGTTAACCGCT    147

BSNT_03280___    151 G----TGGAAACATTCCAGCCGACACACGTCGTCTGCTGCTGGGACATGG    196
                     |    ||    |.||..|.||||..||.|||.||||||||||||||||||
BL00671___ypc    148 GCGTCTG----CGTTTGAACCGAGCCATGTCATCTGCTGCTGGGACATGG    193

BSNT_03280___    197 GGAGCAAAACGTACCGAAATGACTTGTTCCAAGATTATAAGGCCAACCGC    246
                     |.|||||||||||||||||.||.||.||..|.||.|||||.||.|||||.
BL00671___ypc    194 GAAGCAAAACGTACCGAAACGATTTATTTAAGGACTATAAAGCGAACCGG    243

BSNT_03280___    247 AGCGCGCCGCCTGTGGAGCTGATTCCGCAGTTTGATTTGGCAAAGGAAGC    296
                     ||||.|||||||.|.||..||||||||||.|||||..||||.||||||||
BL00671___ypc    244 AGCGAGCCGCCTCTAGAATTGATTCCGCAATTTGACATGGCGAAGGAAGC    293

BSNT_03280___    297 AGCCGCAGAGCTTGGAATCATGAATATTGGCTTTGCCGGCTATGAAGCGG    346
                     .||.|.||||||.||.||..|.|||||.|||.||||.|||||||||||.|
BL00671___ypc    294 GGCGGAAGAGCTCGGGATTTTAAATATCGGCCTTGCGGGCTATGAAGCCG    343

BSNT_03280___    347 ATGACTGTATCGGTACTCTTGC--CGATTTATTTGCGAATGAAGCGGACA    394
                     |||||||.|||||.||.||..|  ||||.| |..||||| ||||||||||
BL00671___ypc    344 ATGACTGCATCGGCACCCTGACAGCGATGT-TCAGCGAA-GAAGCGGACA    391

BSNT_03280___    395 TTACGGTCGTAACAGGGGACAGAGATTTACTTCAGCTGTTAACGGATAAA    444
                     |.|||.||||.||.||.||.|.|||||||||||||||.|||||.|..||.
BL00671___ypc    392 TCACGATCGTCACCGGTGATAAAGATTTACTTCAGCTTTTAACAGTCAAT    441

BSNT_03280___    445 GTAAGCGTTGCTTTGCTTCAAAAAGGAATCGGAAATTATAAAGTCTATAC    494
                     ||.|..|||||..|||||||||||||||||||.||||||||.||.||.||
BL00671___ypc    442 GTTAAAGTTGCCCTGCTTCAAAAAGGAATCGGCAATTATAAGGTATACAC    491

BSNT_03280___    495 AAAAGAGACTTTTTATGAAGAAACAGG---CGTAATGCCGAAGGCTTTGA    541
                     |.||||..|.||...||||||.|||||   ||.|   |||||.|||||||
BL00671___ypc    492 AGAAGAATCATTCAGTGAAGAGACAGGTATCGAA---CCGAAAGCTTTGA    538

BSNT_03280___    542 TTGATATTAAAGCGCTTATGGGAGATTCCAGTGATAACTATCCCGGAGTC    591
                     ||||.|||||||||||.|||||.|||.|.||.|||||.|||||.||.||.
BL00671___ypc    539 TTGACATTAAAGCGCTGATGGGCGATACAAGCGATAATTATCCGGGTGTA    588

BSNT_03280___    592 AAAGGGATTGGAGAAAAAACAGCCTACAAACTGATTCGTGAATA--CGAA    639
                     |||||.||.||.||||||||.||||||||.|||||....|||||  ||  
BL00671___ypc    589 AAAGGCATCGGCGAAAAAACGGCCTACAAGCTGATCAAGGAATATTCG--    636

BSNT_03280___    640 ACGATTGACCGTTTATTGGAAAATCTTTCTCTTCTTCCAAAAGGACAGCA    689
                     ||..|||||||..|..|||||||..|...||..||..|.||.||.|||||
BL00671___ypc    637 ACTGTTGACCGGCTGCTGGAAAACATCGGTCAGCTGACGAAGGGCCAGCA    686

BSNT_03280___    690 GGGAAAAATTCAGC--AAGGTTTAAGCGATTTGGAGATGTCGAGGAAGCT    737
                     |...|||||  |.|  ||.||.||...|||.||.|||||||.||.|..||
BL00671___ypc    687 GACGAAAAT--AACCGAATGTCTAGAAGATCTGAAGATGTCCAGAATTCT    734

BSNT_03280___    738 TGCGGAAATTCATTGCTCAGTGCCGCTGGCCTGCACACTGAAAGACGCTT    787
                     |||.||||||.|.|||...||.|||||..|||||.||.||.|.||.||..
BL00671___ypc    735 TGCAGAAATTAAATGCGATGTACCGCTTTCCTGCTCATTGGACGATGCGG    784

BSNT_03280___    788 TATTTACTTTGCAAATG-------GAGC--AGGCG--GCTGACATGCTTC    826
                     ..||.||.|||   |||       |.||  |||.|  |||||.|  ||||
BL00671___ypc    785 ACTTCACCTTG---ATGCATGACAGGGCAAAGGAGATGCTGAGA--CTTC    829

BSNT_03280___    827 GCCGCCACCAAATCAAA-----GGAATTGAGCGTATGCT--TGAAAAGCT    869
                                ||||||     |||||.||||...||||  |||||..|.
BL00671___ypc    830 -----------ATCAAATACGGGGAATCGAGCCGCTGCTGATGAAATTCG    868

BSNT_03280___    870 GAACGCTAGAGAGATCGTTTAG    891
                     .||  ..||||||||||..||.
BL00671___ypc    869 AAA--AAAGAGAGATCGGATAA    888


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03280 and BL00671

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
