Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03276 and BL00669

See Amino acid alignment / Visit BSNT_03276 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:56
# Commandline: needle
#    -asequence dna-align/BSNT_03276___ypdP.1.5803.seq
#    -bsequence dna-align/BL00669___ypdP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03276___ypdP-BL00669___ypdP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03276___ypdP-BL00669___ypdP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03276___ypdP
# 2: BL00669___ypdP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 725
# Identity:     509/725 (70.2%)
# Similarity:   509/725 (70.2%)
# Gaps:          58/725 ( 8.0%)
# Score: 1748.5
# 
#
#=======================================

BSNT_03276___      1 TTGTTTAA--TAATTCGTTTTGGATCTTTTTTGCGATCATTCATTTTATC     48
                     ||||||||  .|||  .||.|||||...|||||||||||||.||||||||
BL00669___ypd      1 TTGTTTAACGAAAT--ATTATGGATTAGTTTTGCGATCATTAATTTTATC     48

BSNT_03276___     49 ATTGTTCTTTTATTTTATAAAGGATTTGGCAAAATGGGGCTGTTTGTTTG     98
                     ||||||||.||.||||.||||.||||||||||.|..||..|.|||||.||
BL00669___ypd     49 ATTGTTCTCTTCTTTTTTAAACGATTTGGCAAGACCGGTTTATTTGTCTG     98

BSNT_03276___     99 GATCGGTTTTGCGACAGTCTGCGCCAACCTCCAAGTCGTCAAAACAGTGG    148
                     |||||||||||||||||.|..||||||..||.|.||.||||||||.||.|
BL00669___ypd     99 GATCGGTTTTGCGACAGCCGCCGCCAATATCGAGGTAGTCAAAACGGTCG    148

BSNT_03276___    149 AACTGTTTGGCTTAACAGCGACACTCGGGAATGTGATGTATGGCACAATC    198
                     |.|||||.||.||.||.|||||.|||||.||..|..||||.||.|...|.
BL00669___ypd    149 AGCTGTTCGGTTTGACTGCGACGCTCGGCAACATCCTGTACGGAAGCGTG    198

BSNT_03276___    199 TTTTTTGCGACAGATGTGCTGAATGAAAAATACGGACCAGCTGAAGCCAG    248
                     |||||||||||.||.||..|.|||||||.|||||||...|..|||||.|.
BL00669___ypd    199 TTTTTTGCGACCGACGTCATCAATGAAAGATACGGAAAGGAAGAAGCGAA    248

BSNT_03276___    249 AAAAGCGGTATGGCTCGG-------ATTCTCA--ACGCTCCTGACGCTGA    289
                     ||||||.||.|...||||       |||||.|  ||   |.||||||   
BL00669___ypd    249 AAAAGCCGTTTCAATCGGTTTTTTCATTCTGATTAC---CTTGACGC---    292

BSNT_03276___    290 CATTTGTCATGCAGGGCGTGCTGCTTTTCGAACCGGCTTCCAG-CGACAT    338
                        |.|||||||||||.|.|||.||.||| ||.|.||.|||.| .|||||
BL00669___ypd    293 ---TCGTCATGCAGGGAGCGCTCCTATTC-AAGCCGCATCCCGAAGACAT    338

BSNT_03276___    339 ATCACAAACAGCGCTGGAAACGATCTTCGGATTCCTTCCGCGAGTTGCGT    388
                     ..||||..|.||||||||.|||||.|||||.|||.|.||.||.||.||..
BL00669___ypd    339 CGCACAGCCTGCGCTGGAGACGATATTCGGCTTCTTGCCCCGCGTGGCCC    388

BSNT_03276___    389 TAGGAAGTCTGCTTGCCTTTATCTTCAGCCAAACGCTGGATGTTTATGTA    438
                     |.||.||.|||||.||||.||||.|||||||||||||.||||||||||||
BL00669___ypd    389 TCGGCAGCCTGCTCGCCTATATCATCAGCCAAACGCTTGATGTTTATGTA    438

BSNT_03276___    439 TATTCGGCAATTAGAAGGATATTTCCTTCTGATCGGCTTTTATGGCTCAG    488
                     |||||||.|||.||||||.||||||||||.||.|||....|.|||||..|
BL00669___ypd    439 TATTCGGGAATCAGAAGGTTATTTCCTTCCGACCGGGCACTGTGGCTTCG    488

BSNT_03276___    489 AAACGGCGGCAGTACAGCAGTCAGCCAGCTGTTTGATACATTCATATTCA    538
                     .|||.|||||||||||||..|.|||||||||.|||||||.||.||.||.|
BL00669___ypd    489 CAACAGCGGCAGTACAGCCTTAAGCCAGCTGCTTGATACGTTGATTTTTA    538

BSNT_03276___    539 CTTCAGTCGCCTTTCTCGGCATTTATCCGGCAGG-CGTGTGGCTTCATAT    587
                     |....|||||.|||.|.|||..|||||| ||.|| .||.|||.||||.||
BL00669___ypd    539 CGAGCGTCGCGTTTATGGGCGCTTATCC-GCTGGATGTATGGATTCAGAT    587

BSNT_03276___    588 TTTTATTTCTACATA---TTTGATTAAGT-----TTGCGGTATCTTTGAT    629
                     ||||||..|.|||||   .||||  ||.|     |.||.||||      |
BL00669___ypd    588 TTTTATCACGACATACGTCTTGA--AATTCGTTGTAGCCGTAT------T    629

BSNT_03276___    630 TTCATTGCCTTATGCTTATGCAGCCAAAAAAATGATACCTAAAGATGAAA    679
                     ..||..|||.||.||||||||.||.||||..||.|..|||...|||||||
BL00669___ypd    630 CGCAGCGCCGTACGCTTATGCCGCTAAAAGGATCACCCCTTTGGATGAAA    679

BSNT_03276___    680 GGAGTTCATAA--------------    690
                     ||||  |..||              
BL00669___ypd    680 GGAG--CGAAAACAATGCCGGTTGA    702


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