Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03436 and BL00649
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:25
# Commandline: needle
# -asequence dna-align/BSNT_03436.1.5803.seq
# -bsequence dna-align/BL00649___rsiX.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03436-BL00649___rsiX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03436-BL00649___rsiX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03436
# 2: BL00649___rsiX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1268
# Identity: 614/1268 (48.4%)
# Similarity: 614/1268 (48.4%)
# Gaps: 430/1268 (33.9%)
# Score: 1261.0
#
#
#=======================================
BSNT_03436 0 -------------------------------------------------- 0
BL00649___rsi 1 ATGAAGAAGTCAGAATGGAACGAAGAACGGCTGAAGGCGTTACTAAGCCA 50
BSNT_03436 0 -------------------------------------------------- 0
BL00649___rsi 51 ACTTCCAACGGTTAAGGATAATCGTTCGGCAAATCAGATCTATCAAAAGC 100
BSNT_03436 1 -----ATGG---CAAAGCGTAAA------AATAAGCCCGCTGTCAGGTGG 36
.|.| ||||||||||| ||.||.| ||
BL00649___rsi 101 TGATTCTCGCACCAAAGCGTAAATCACCGAAAAAAC------------GG 138
BSNT_03436 37 ATTGGCCCCGCGTGTGCCGCTGCAATTGCGGTT-TATATCGCCT--TCAT 83
.|.|| |||.|.|||.|||.||.||..|||| |.|.||..|| |..|
BL00649___rsi 139 GTCGG---CGCATTTGCTGCTACAGTTTTGGTTCTCTTTCTTCTGATGCT 185
BSNT_03436 84 TATTTCTCCTCATTTCTTTGATCAGGCA-CAG-CCTCAACAAAAAGAAGC 131
.||..||||.||.||..|.||.||| | ||| .|||| |||.||...|
BL00649___rsi 186 GATCACTCCCCAGTTAATCGAACAG--ATCAGATCTCA--AAACAGCGCC 231
BSNT_03436 132 GTC-CCAAGA--------GAACGCAGTAACGAAAACTG----AGACAGAA 168
|.| ||||.| | ||| |||||.|| ||||.||.
BL00649___rsi 232 GACGCCAACATTTCTTCTG-ACG-------GAAAATTGGTGCAGACGGAG 273
BSNT_03436 169 GACAGCCCAAAAGCTGCATCGTCCTTGGATC-----ATACATCGTTTGTT 213
| |..|.|||||...||| ||.|.| ||| |||||||.
BL00649___rsi 274 G------CTGATGCTGCCAAGTC--TGAACCTGCAAATA---CGTTTGTC 312
BSNT_03436 214 GTACCTGAAAAGGAACAAGACAATTACATCACTGTAGCAGTTGCTGATGC 263
||..|..|.||..||.|||||.|.||.|||||..|.|| .||.|| ||.
BL00649___rsi 313 GTCTCACAGAATCAAAAAGACGACTATATCACCTTCGC-TTTCCT--TGA 359
BSNT_03436 264 CGA-TACA--TCCGCAATCATACCCGTCAGCATCCA-AAAAACAAATGCA 309
||| |.|| ||.|...|..|.||.||.|||.||.| ||||.||...|||
BL00649___rsi 360 CGAGTCCAAGTCTGTCGTTGTCCCGGTAAGCCTCGAGAAAAGCACTGGCA 409
BSNT_03436 310 -GACCAAACGATCCAGGATATGCTGTT-----TGAAAGTAG---TGAATT 350
|||.| |||..|.|.||||..|| |.|.||..| ||.|.|
BL00649___rsi 410 TGACAA----ATCTTGAAGATGCGCTTCACGCTTACAGCCGGCTTGGAGT 455
BSNT_03436 351 GGGCATCC--TTGATCATGCCATT--ACAATTCCA----ACCTTCAT-AG 391
|| .|| ||.| ||| |||| ||| || |||||.|| ||
BL00649___rsi 456 GG---ACCAGTTTA-CAT--CATTTGACA----CAGCTTACCTTGATAAG 495
BSNT_03436 392 ATGAAGTAGAAATAAAGGAAAAAC----CAAAGCAGAAGGAATT-AAGTA 436
.||||||..|||.|...||||||| .|||.|.|||| ||| ||||.
BL00649___rsi 496 GTGAAGTTCAAAGAGCAGAAAAACAATAAAAAACTGAAG--ATTCAAGTT 543
BSNT_03436 437 TACGAGTCCATCAGCC--AGCTACGGCATTTTCTGTAAAAGAT---GATA 481
.|.|||...|| .|| ||||| ||.||..||||| ||
BL00649___rsi 544 GATGAGAAAAT--ACCGGAGCTA--------TCAGTCGAAGATTTCGA-- 581
BSNT_03436 482 CACTGTTAAAAAAATTGCTTAAAGAATCCTTAAAATGGAGTCCTTATGAA 531
||.|.|.|||||..||.|.||.|||.||||.||||||.|..|.||||
BL00649___rsi 582 -ACGGCTGAAAAATGTGATCAACGAAACCTTTAAATGGGGATCGTATG-- 628
BSNT_03436 532 AAAGTCAAATT------------TTT----------ATCG---GATCAAA 556
||| ||| |||| |.|.||.
BL00649___rsi 629 --------ATTCTGTTCTGTTTATTTCCAATGATAAATCGGGTGTTGAAT 670
BSNT_03436 557 ATGAGACTGGGGTTCGGATTGGCTC----ATATGGCACTTTTACGGAAAT 602
.|||.|| .||||||.| |||| ||||||
BL00649___rsi 671 TTGAAAC----ATTCGGAAT-GCTCGCCGATATGG--------------- 700
BSNT_03436 603 TTCGATT----CCCAAACAGTCAAAAAGAGCTTACTACTTGTATAAAAAT 648
||||| .|||.|| .|||||| .|| |||||.||.|||.|||..
BL00649___rsi 701 --CGATTATGCACCAGAC--GCAAAAA-TGC-TACTATTTATATGAAAGC 744
BSNT_03436 649 AAACAAGGGAAC---TTTCT--CATTCCGTCAGAAAAAACATTTGATACG 693
..|.|.|||..| ||.|| || ||.|||....||.|.|..||..||
BL00649___rsi 745 TCAGACGGGCGCCGGTTCCTTGCA--CCTTCAAGCGAATCTTACGAATCG 792
BSNT_03436 694 GTAAAAGAAGCGATTA-----ATGAAATGGAATCGAGCAGCCAAGAAGAT 738
||..|.|||||||||| |||||| |.|.|||||
BL00649___rsi 793 GTGCAGGAAGCGATTAAGATGATGAAA-----------AACGAAGAA--- 828
BSNT_03436 739 ACAACACCGCTTATTCAAGCGGGTACTGTCCA----ATCTGTAACGAAGA 784
|.|..|.||.|||.|| .|| ||| ||| |||.||
BL00649___rsi 829 --AGCGGCACTCATTTAA-----AAC---CCATTTTATC-----CGATGA 863
BSNT_03436 785 AAC------AGAAGCACTTATATATCCGTTTCTCAAAGGACT----CAGA 824
.|| .|||| |||| |||||.||.| .|||
BL00649___rsi 864 TACGCCGATTGAAG-------ATAT-------TCAAAAGAATGGAAAAGA 899
BSNT_03436 825 AGTTGAGGATTCTATT----------GCCGGTATT--------------- 849
| .|||..||||.||| ||...||||
BL00649___rsi 900 A-CTGATCATTCAATTTTCTTCCTCCGCGAATATTGAAAATAAACCCGAA 948
BSNT_03436 850 ------TTAATGATTGAGGGACTTCTTTTAACCGCAAAAGAGTTTGGCTT 893
||.|||.|.||.||.|||||.||.|||||.|||||.||.|||||
BL00649___rsi 949 GATGTCTTGATGGTGGAAGGCCTTCTATTGACCGCGAAAGATTTCGGCTT 998
BSNT_03436 894 CACAGAAGTGACCTTT---ACCGAAACCAGAACAAACAAAATCGGCAAAT 940
||||.||||||..||| |.||.|.|||.||| |||..|||||...|
BL00649___rsi 999 CACAAAAGTGAAATTTAAAAACGCATCCATAAC---CAAGGTCGGCGCCT 1045
BSNT_03436 941 ATGACGTATCAGATGCAATTCCGGTACCGGCT------GCTCCAAATCCG 984
|||||.|.|| |.||| |.||||.||.| ||.||.||||||
BL00649___rsi 1046 ATGACCTGTC----GAAAT--CTGTACAGGTTCCGTACGCACCGAATCCG 1089
BSNT_03436 985 AT---TTTCTTAAACTAA 999
|| ..|...|||||||
BL00649___rsi 1090 ATGACGATAGAAAACTAA 1107
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