Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02934 and BL00646

See Amino acid alignment / Visit BSNT_02934 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:37
# Commandline: needle
#    -asequence dna-align/BSNT_02934___yndB.1.5803.seq
#    -bsequence dna-align/BL00646___yndB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02934___yndB-BL00646___yndB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02934___yndB-BL00646___yndB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02934___yndB
# 2: BL00646___yndB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 479
# Identity:     289/479 (60.3%)
# Similarity:   289/479 (60.3%)
# Gaps:          94/479 (19.6%)
# Score: 738.5
# 
#
#=======================================

BSNT_02934___      1 ATG-GCTCAAAACAACGAAAATGCATTACCGGATATTACAAAAAGCA---     46
                     ||| ||   ||.||||       .|.|.||.|||| ||||.||| ||   
BL00646___ynd      1 ATGAGC---AATCAAC-------TAGTGCCTGATA-TACATAAA-CAGGC     38

BSNT_02934___     47 --TTACTCTGGAGGCTCCCATTCAGAAAGTCTGGGAGACAGTCTCTACTT     94
                       ||..||   |.||..|.||..|.|||||.||||||.|.|||.|.||  
BL00646___ynd     39 TGTTTTTC---ACGCATCGATAGAAAAAGTGTGGGAGGCCGTCGCCAC--     83

BSNT_02934___     95 CA--GAAGGCATTGCCAAGTGGTTTATGCCCAATGACTTTCAGCTCAAAG    142
                     ||  ||||||||.|||...|||||||||||.||||| ||||.||.|..||
BL00646___ynd     84 CAGTGAAGGCATCGCCGCCTGGTTTATGCCTAATGA-TTTCCGCCCGGAG    132

BSNT_02934___    143 A-AGGACAAGAATTTCA-CTTACAATCGCCGTTTGGGCCGTCCCCTTGTA    190
                     | .||....||| |||| |.|.||.||.||.||.||.||.|||||.||.|
BL00646___ynd    133 ATCGGCTGCGAA-TTCACCCTGCAGTCTCCTTTCGGCCCCTCCCCGTGCA    181

BSNT_02934___    191 AAGTTTTGGCTGTTCAAGCTCCAACTGA------------ACTTTCTTTT    228
                     |||       ||.||.||||     |||            |||..||||.
BL00646___ynd    182 AAG-------TGATCGAGCT-----TGATGCGCCGCATCGACTCGCTTTC    219

BSNT_02934___    229 GAATGGGATACAGAAGGATGGGTCGTTACCTTTCAATTAGAAGA-CTT--    275
                     ...||||||||....||||||.||||.||.|||.||||..|||| |||  
BL00646___ynd    220 AGCTGGGATACGTCGGGATGGATCGTCACATTTGAATTGAAAGAGCTTTC    269

BSNT_02934___    276 GGGGGAAAAGACAGGGTTTACCCTTATTCA--CAGCGGCTGGAAAGAGCC    323
                     .|..|||||.||.|..||||||||.|||||  ||  ||.|||...|.|||
BL00646___ynd    270 TGCAGAAAAAACCGAATTTACCCTGATTCATTCA--GGATGGGGTGCGCC    317

BSNT_02934___    324 GAATGAAGTGATCGG---CAAAGCAAAC--GAGAAAAGC---------TC    359
                     |.|.||    |.|||   |||   ||.|  |||||||||         ||
BL00646___ynd    318 GGAAGA----AACGGTTTCAA---AAGCGGGAGAAAAGCAAGCGGATGTC    360

BSNT_02934___    360 CGTCGTTCGCGGTAAGATGGATGGCGGCTGG---ACTGGCATTGTAAATG    406
                     || |..|||      ||||.|||||||||||   ||   .||.||.|||.
BL00646___ynd    361 CG-CAATCG------GATGAATGGCGGCTGGGAAAC---AATCGTCAATC    400

BSNT_02934___    407 AACGGCTTCGTAAGGCTGTCGAAGAATAA    435
                     ||..|||.|||.||||.||.||.|..||.
BL00646___ynd    401 AAAAGCTGCGTCAGGCAGTTGAGGGCTAG    429


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