Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02934 and BL00646
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:37
# Commandline: needle
# -asequence dna-align/BSNT_02934___yndB.1.5803.seq
# -bsequence dna-align/BL00646___yndB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02934___yndB-BL00646___yndB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02934___yndB-BL00646___yndB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02934___yndB
# 2: BL00646___yndB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 479
# Identity: 289/479 (60.3%)
# Similarity: 289/479 (60.3%)
# Gaps: 94/479 (19.6%)
# Score: 738.5
#
#
#=======================================
BSNT_02934___ 1 ATG-GCTCAAAACAACGAAAATGCATTACCGGATATTACAAAAAGCA--- 46
||| || ||.|||| .|.|.||.|||| ||||.||| ||
BL00646___ynd 1 ATGAGC---AATCAAC-------TAGTGCCTGATA-TACATAAA-CAGGC 38
BSNT_02934___ 47 --TTACTCTGGAGGCTCCCATTCAGAAAGTCTGGGAGACAGTCTCTACTT 94
||..|| |.||..|.||..|.|||||.||||||.|.|||.|.||
BL00646___ynd 39 TGTTTTTC---ACGCATCGATAGAAAAAGTGTGGGAGGCCGTCGCCAC-- 83
BSNT_02934___ 95 CA--GAAGGCATTGCCAAGTGGTTTATGCCCAATGACTTTCAGCTCAAAG 142
|| ||||||||.|||...|||||||||||.||||| ||||.||.|..||
BL00646___ynd 84 CAGTGAAGGCATCGCCGCCTGGTTTATGCCTAATGA-TTTCCGCCCGGAG 132
BSNT_02934___ 143 A-AGGACAAGAATTTCA-CTTACAATCGCCGTTTGGGCCGTCCCCTTGTA 190
| .||....||| |||| |.|.||.||.||.||.||.||.|||||.||.|
BL00646___ynd 133 ATCGGCTGCGAA-TTCACCCTGCAGTCTCCTTTCGGCCCCTCCCCGTGCA 181
BSNT_02934___ 191 AAGTTTTGGCTGTTCAAGCTCCAACTGA------------ACTTTCTTTT 228
||| ||.||.|||| ||| |||..||||.
BL00646___ynd 182 AAG-------TGATCGAGCT-----TGATGCGCCGCATCGACTCGCTTTC 219
BSNT_02934___ 229 GAATGGGATACAGAAGGATGGGTCGTTACCTTTCAATTAGAAGA-CTT-- 275
...||||||||....||||||.||||.||.|||.||||..|||| |||
BL00646___ynd 220 AGCTGGGATACGTCGGGATGGATCGTCACATTTGAATTGAAAGAGCTTTC 269
BSNT_02934___ 276 GGGGGAAAAGACAGGGTTTACCCTTATTCA--CAGCGGCTGGAAAGAGCC 323
.|..|||||.||.|..||||||||.||||| || ||.|||...|.|||
BL00646___ynd 270 TGCAGAAAAAACCGAATTTACCCTGATTCATTCA--GGATGGGGTGCGCC 317
BSNT_02934___ 324 GAATGAAGTGATCGG---CAAAGCAAAC--GAGAAAAGC---------TC 359
|.|.|| |.||| ||| ||.| ||||||||| ||
BL00646___ynd 318 GGAAGA----AACGGTTTCAA---AAGCGGGAGAAAAGCAAGCGGATGTC 360
BSNT_02934___ 360 CGTCGTTCGCGGTAAGATGGATGGCGGCTGG---ACTGGCATTGTAAATG 406
|| |..||| ||||.||||||||||| || .||.||.|||.
BL00646___ynd 361 CG-CAATCG------GATGAATGGCGGCTGGGAAAC---AATCGTCAATC 400
BSNT_02934___ 407 AACGGCTTCGTAAGGCTGTCGAAGAATAA 435
||..|||.|||.||||.||.||.|..||.
BL00646___ynd 401 AAAAGCTGCGTCAGGCAGTTGAGGGCTAG 429
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