Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04062 and BL00642

See Amino acid alignment / Visit BSNT_04062 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:07
# Commandline: needle
#    -asequence dna-align/BSNT_04062___spoIVFA.1.5803.seq
#    -bsequence dna-align/BL00642___spoIVFA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04062___spoIVFA-BL00642___spoIVFA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04062___spoIVFA-BL00642___spoIVFA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04062___spoIVFA
# 2: BL00642___spoIVFA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 875
# Identity:     554/875 (63.3%)
# Similarity:   554/875 (63.3%)
# Gaps:         163/875 (18.6%)
# Score: 1591.0
# 
#
#=======================================

BSNT_04062___      1 ATGAGTCACAGAGCAGATGAAATCAGAAAACGATT----AGAGAAAAGAA     46
                     ||||||||.|||||||||||.||..|||||.||.|    || ||||||||
BL00642___spo      1 ATGAGTCATAGAGCAGATGAGATTCGAAAAAGAATGGCCAG-GAAAAGAA     49

BSNT_04062___     47 ----GAAAGCAGCTTTCCGGCTCAAA----ACGTTTCTCTACTCAGACAG     88
                         ||||.||     |||| .||||    .|.||||    .||||||.|
BL00642___spo     50 AGCGGAAAACA-----CCGG-ACAAACAGCCCTTTTC----ATCAGACGG     89

BSNT_04062___     89 TTTCTGAAAAGCAG------AAACCCCCGTCCTGGGTG-ATGG-------    124
                         ..||||||.|      ||.||.||        || ||||       
BL00642___spo     90 ----CAAAAAGCGGCCGCTCAAGCCGCC--------TGCATGGACAGCCT    127

BSNT_04062___    125 TAACGGATCAGGAAAAACATGGA--ACAATTCC-----GGTTTATGAAGA    167
                     |..||||..|.||||||   |||  |.|.||||     ..|..|.|||| 
BL00642___spo    128 TTTCGGAAGATGAAAAA---GGAGGAGACTTCCCTCCGCCTGAAGGAAG-    173

BSNT_04062___    168 TAACATGCCAACATTCAACGGAAAACACCCATTGGTGAAAACAGATTCAA    217
                     |..|.|||..|   |.|||||.||.|||||..|.||.||..|.|||.|..
BL00642___spo    174 TTCCCTGCTGA---TAAACGGGAAGCACCCGCTTGTCAAGGCGGATGCGC    220

BSNT_04062___    218 TTATCCTGAAATGTCTTCTGTCGGCCTGCCTTGTTCTCGTTTCAGCTATA    267
                     |.|||.|||||||||||||||||||.|||||||||||.||.||.||.||.
BL00642___spo    221 TCATCTTGAAATGTCTTCTGTCGGCATGCCTTGTTCTTGTGTCCGCCATT    270

BSNT_04062___    268 GCCTATAAAACAAA---CA--TTGGACCCGTCAGTCAGATTAAACCCGCC    312
                     ||||     |||||   ||  |||.|||||..|..||.||.|||||.|..
BL00642___spo    271 GCCT-----ACAAAGGCCAGTTTGAACCCGCAAACCAAATCAAACCGGTT    315

BSNT_04062___    313 GT-AGCCAAAACC----TTTGAAACTGAA---TTTCAATTTG----CCT-    349
                     .| |||||         |||   ||||||   ||.|||||||    ||| 
BL00642___spo    316 ATCAGCCA-----GGTGTTT---ACTGAAGAGTTCCAATTTGCGGCCCTC    357

BSNT_04062___    350 CAGCAAGCCATTGGTTCGAAACCAAATTCGGAAATCCGCTTGCTTTCCT-    398
                     |||     .||||||..|||.||||.|||||..||||.||.||.|||.| 
BL00642___spo    358 CAG-----AATTGGTATGAATCCAAGTTCGGCGATCCCCTCGCATTCTTT    402

BSNT_04062___    399 ---------GGCTCCTGAACACAAAAA---TAAGGAACAG--CAAATTGA    434
                              |||.||         |||   |..|| .|||  |.|..|||
BL00642___spo    403 CAGCCGAAAGGCGCC---------AAACCGTCCGG-CCAGGTCGAGGTGA    442

BSNT_04062___    435 AGTAGGCAAAGATCTGATCGC---GCCTGCATCCG--GGAAA-GTACAGC    478
                     |..||     ||||   ||||   .||||   |||  ||||| ||.|||.
BL00642___spo    443 ATCAG-----GATC---TCGCTGTACCTG---CCGTAGGAAAGGTTCAGG    481

BSNT_04062___    479 AG-GATTTTCAGGACAATGGGGAAGGAATTAAAGTCGAAACAAGCAG-TG    526
                     || .|||.|||       |||.|.||.|||||.||.||||| ||.|| .|
BL00642___spo    482 AGAAATTCTCA-------GGGCAGGGCATTAAGGTAGAAAC-AGAAGACG    523

BSNT_04062___    527 ATAAGATTGATAGCGTAAAAGAAGGCTATGTGGTTGAAGTCAGCAAAGAC    576
                     |.|.|||....|||.|.||.|||||||||||..|||||||  |.|.|.|.
BL00642___spo    524 AAACGATCCGCAGCATGAAGGAAGGCTATGTCATTGAAGT--GGACAAAA    571

BSNT_04062___    577 AGCC--AAACGGGACTGACGGTTAAGG---TGCAGCATGCTGACAACACC    621
                     |.||  ||||.||.||||||||   ||   ||||||||||.|||||||.|
BL00642___spo    572 ATCCGGAAACAGGCCTGACGGT---GGTCTTGCAGCATGCGGACAACAGC    618

BSNT_04062___    622 TATA-GTATCTATGGCGAGCTCAAAGATGTGGATGTTGCTTTATATGATT    670
                     |||| .|| |||.|||.||||.|||.|.|.||||||.||||||||.||||
BL00642___spo    619 TATACCTA-CTACGGCCAGCTGAAAAAAGCGGATGTCGCTTTATACGATT    667

BSNT_04062___    671 TTGTGGATAAAGGCAAAAAGCTCGGTTCGATTAAGCTTGATGATCATAAT    720
                     .|.|.||||||||.|..||||||||..|||||.|||..|||.|..||.|.
BL00642___spo    668 ATATAGATAAAGGAACGAAGCTCGGAACGATTGAGCAGGATAAAAATCAA    717

BSNT_04062___    721 AAAGGGGTCTATTATTTTGCCATGAAAGACGGCGATAAATTTATTGATCC    770
                     |||||..|||||||.|||||.||.|||.|.||.||..|||||.|||||||
BL00642___spo    718 AAAGGCATCTATTACTTTGCGATCAAACAAGGAGAGGAATTTGTTGATCC    767

BSNT_04062___    771 GATTCAGGTGATTACATTTGAATAA    795
                     |||.||||||||.||||||||.|||
BL00642___spo    768 GATACAGGTGATCACATTTGAGTAA    792


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04062 and BL00642

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
