Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04065 and BL00639

See Amino acid alignment / Visit BSNT_04065 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:07
# Commandline: needle
#    -asequence dna-align/BSNT_04065___mreD.1.5803.seq
#    -bsequence dna-align/BL00639___mreD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04065___mreD-BL00639___mreD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04065___mreD-BL00639___mreD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04065___mreD
# 2: BL00639___mreD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 546
# Identity:     358/546 (65.6%)
# Similarity:   358/546 (65.6%)
# Gaps:          54/546 ( 9.9%)
# Score: 1132.0
# 
#
#=======================================

BSNT_04065___      1 GTGAAACGTTTCCTTCTCCCTTTCGTTATGATGCTTGTTT---TTTCTGC     47
                     ||||||||.||||||||.||..||||.||||||.||||||   |.|||  
BL00639___mre      1 GTGAAACGCTTCCTTCTTCCCGTCGTCATGATGTTTGTTTTAGTATCT--     48

BSNT_04065___     48 GGAAAGCATTTTTACAGATTTGGTGCATTTTCCTTTCGTTACAGATGACC     97
                      ||.|||.|.|.|.|.|||||.||..|.||.|||||.||.||.||.||.|
BL00639___mre     49 -GACAGCGTCTATGCGGATTTTGTCAACTTGCCTTTTGTGACGGAAGAAC     97

BSNT_04065___     98 AAGTGCTCGCCCCGCGTTTTTTGATGCTTGTATTGATATTCATGTCGGCT    147
                     |...||||..||||||||||.||.|||||||.||..|.||.|||.|||||
BL00639___mre     98 AGCAGCTCATCCCGCGTTTTCTGCTGCTTGTCTTAGTTTTTATGACGGCT    147

BSNT_04065___    148 TTTATCAACCAAAAACAC-----GCGATGATTTACGGATTTATTTTTGGT    192
                     |.|.||||.||     .|     ||.||.|..||.|||||||||||.||.
BL00639___mre    148 TATGTCAATCA-----GCCTTTTGCCATTACATATGGATTTATTTTCGGA    192

BSNT_04065___    193 TTTCTATATGACATGAACTATACAAGTCTATTAGGCGTTTACATGTTTGG    242
                     .|..|||||||.||.||.||.||....||.|||||.||.||.||||||||
BL00639___mre    193 CTGTTATATGATATTAATTACACCGACCTTTTAGGTGTATATATGTTTGG    242

BSNT_04065___    243 TTTTGCAGGGCTATGCTATTTGGCTTCAAAAGCGTTTAAAGTGTTACATA    292
                     ||||||.||..|.||||||||..|.|||||||||||.|||||.||.||.|
BL00639___mre    243 TTTTGCCGGTATTTGCTATTTATCGTCAAAAGCGTTCAAAGTATTGCAGA    292

BSNT_04065___    293 CAAACGCATTTGTAGTGATATTGATAGCAGTTCTGGCTGTCTGTCTGCTC    342
                     |||||||..|.||.||.||.||.||..|..|.||.||.||||||.|.||.
BL00639___mre    293 CAAACGCGCTGGTCGTCATTTTTATTTCGCTGCTCGCCGTCTGTGTTCTT    342

BSNT_04065___    343 GAATTTTACGTATTCGGCATTCAGTCTTTGATTCATAAAGACATTATGAC    392
                     |||||||||..||..|||.|.|||....||||.|.|...||.||||||.|
BL00639___mre    343 GAATTTTACCAATATGGCGTGCAGATGCTGATACGTCCGGAAATTATGCC    392

BSNT_04065___    393 GTTTAACGGATTTGTGCTTGACCGGTTTATACCGACAATTTTATTAAATA    442
                     |||..|...|||||||||.|.|.||.|..|.||.||..||          
BL00639___mre    393 GTTCCATCAATTTGTGCTCGGCAGGCTCCTGCCCACGCTT----------    432

BSNT_04065___    443 TTGCAGCAGCTCTTATTC----TTG------TTCTGC-CATTT-------    474
                             ||.||.| .|    |||      |||||| |||||       
BL00639___mre    433 --------GCGCTGA-ACGCCGTTGGCGGCCTTCTGCTCATTTACCCGTT    473

BSNT_04065___    475 -AGATTGTTTTTTATGAGTCTAAAGAAAGAATTGAGAGATGAGTAA    519
                      |.||.||||||||..|||||.||||||||..||||..||||||||
BL00639___mre    474 CAAATGGTTTTTTACCAGTCTTAAGAAAGAGCTGAGGAATGAGTAA    519


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