Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04068 and BL00638
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:07
# Commandline: needle
# -asequence dna-align/BSNT_04068___mreC.1.5803.seq
# -bsequence dna-align/BL00638___mreC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04068___mreC-BL00638___mreC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04068___mreC-BL00638___mreC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04068___mreC
# 2: BL00638___mreC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 924
# Identity: 643/924 (69.6%)
# Similarity: 643/924 (69.6%)
# Gaps: 66/924 ( 7.1%)
# Score: 2160.5
#
#
#=======================================
BSNT_04068___ 1 ATGCCG------------AATAAGCGGTTAATGCTATTACTTCTGTGTAT 38
|||||| |||||.|||||.|||||.|||||.||.|||||
BL00638___mre 1 ATGCCGCAGTTTTTTACAAATAAACGGTTGATGCTTTTACTCCTTTGTAT 50
BSNT_04068___ 39 TATCATATTGGTGGCTATGATTGGATTTTCGCTGAAGGGCGGCCGCAATA 88
.|||||.||.|||||.|||||||||||||||.|.|||...|.|||.|||.
BL00638___mre 51 CATCATTTTAGTGGCAATGATTGGATTTTCGTTAAAGAATGACCGGAATG 100
BSNT_04068___ 89 CCACCTGGCCTGAGAAAGTGATCGGCGATACGACGGGAGTATTTCAAAAT 138
|.||.|||||.||.|||.|.||.||||||||.||.||.|||||.||.|..
BL00638___mre 101 CAACTTGGCCCGAAAAATTTATTGGCGATACAACTGGTGTATTCCAGACG 150
BSNT_04068___ 139 ATTTTTCATACGCCTGCCGAATTTTTTGCAGGAATATTTGAGAACATCAA 188
||||||||||||||.||..||||||||||.||..|.|||||.||.|||.|
BL00638___mre 151 ATTTTTCATACGCCCGCTCAATTTTTTGCGGGCTTCTTTGAAAATATCGA 200
BSNT_04068___ 189 TGATTTAAAAAACACATACAAAGAAAACGAGCGTCTAAGAGAAAAA-CTT 237
.||.||||||||.||.||||..|||||.|||||.||..| |||||| ||.
BL00638___mre 201 AGACTTAAAAAATACGTACAGCGAAAATGAGCGCCTGCG-GAAAAAGCTC 249
BSNT_04068___ 238 GACGGACAGACACAATATGAAGCCAAGCTTCAAGAGCTTGAAGAAGAAAA 287
|||||.|||||||||||.||.||.|||||.||.|||||||||.|.|||||
BL00638___mre 250 GACGGCCAGACACAATACGAGGCAAAGCTGCAGGAGCTTGAAAATGAAAA 299
BSNT_04068___ 288 CAAATCCTTGCGTGACGAGCTTGGCCATGTCAAATCGATTAAAGATTACA 337
.||.||.||..|..|.|||||.||||||.|.|||||.||||||||.||||
BL00638___mre 300 TAAGTCTTTAAGAAAAGAGCTCGGCCATCTGAAATCAATTAAAGACTACA 349
BSNT_04068___ 338 AGCCGATTTTAGCAACGGTCATCGCCAGAAGCCCTGATA------ATTGG 381
.|||||||.|.||.||.||.||||||||||..||.|||| |.|||
BL00638___mre 350 CGCCGATTCTGGCGACCGTTATCGCCAGAAATCCCGATAAGTATGAGTGG 399
BSNT_04068___ 382 GCCAAACAGGTCACCATTAACAAGGGGACTCAGCAAAACGTAGCGAAAGA 431
...||.|.|.|.||.||.|||||.||..|..||||...|||.|.|||.||
BL00638___mre 400 TGGAACCTGATTACGATCAACAAAGGTTCAAAGCACGGCGTTGAGAAGGA 449
BSNT_04068___ 432 TATGGCCGTTACAAACGAAAAAGGCGCATTAATCGGCAAGATCAAAAGCT 481
||||||.||.|||.|.|||||.|||...||.|||||.||.|||||||||.
BL00638___mre 450 TATGGCGGTAACAGATGAAAACGGCAACTTGATCGGAAAAATCAAAAGCA 499
BSNT_04068___ 482 CCGGACTTAACAATTTTACGTCTACTGTTCAGCTTTTAAGCGATACTGAC 531
|...|.|.||||||||.||.||.||.||.|||||||||||||..||.|||
BL00638___mre 500 CAAAAGTGAACAATTTCACTTCCACCGTCCAGCTTTTAAGCGCAACAGAC 549
BSNT_04068___ 532 CGCAATAACAGAGTCGCGACAAAAATTTCCGGAAAAAAAGGC-AGCAAAG 580
.|.||.||||||.||.|.|||...||..|.|.|.|.|||||| ||.|||.
BL00638___mre 550 AGAAACAACAGAATCTCCACAGTTATCGCTGCAGATAAAGGCAAGAAAAC 599
BSNT_04068___ 581 GCT--ACGGCTTGATCGAAGGATATGACAAAGAGAAAAA-ACGTCTTAAG 627
|.| ||||..|.|||.|.||.||.|||..|||.||||| .|| |||...
BL00638___mre 600 GGTGAACGGAATCATCAACGGCTACGACTCAGATAAAAAGGCG-CTTTCC 648
BSNT_04068___ 628 ATGACAATTATTGAGCGTAAGGATAAACA-AGACGTGAAAAAAGGCGATC 676
|||..|||.||.||||.|.|.|| |.||| .||.|||||||||||.||.|
BL00638___mre 649 ATGGAAATCATCGAGCCTGATGA-AGACAGGGAAGTGAAAAAAGGTGACC 697
BSNT_04068___ 677 TTATTGAAACATCAGGGACAGGCGGTGTTTTCCCAGAAGGGCTGACAATC 726
|..|.|||||.||.||..|.|||||.|||||.||..||||.|||||||||
BL00638___mre 698 TCGTCGAAACTTCCGGTGCGGGCGGCGTTTTTCCTAAAGGCCTGACAATC 747
BSNT_04068___ 727 GGTGAAGTGACTGATATCGAGTCAGATTCCTATGGACTGACGAAGGTTGC 776
||..|||||||.||..|.||..||||||||||.||..|||||||..|.||
BL00638___mre 748 GGAAAAGTGACAGAGGTTGAACCAGATTCCTACGGTTTGACGAAAATCGC 797
BSNT_04068___ 777 TTATGTAAAACCCGCGGC---------TGACCTTACAGATTTAAATAATG 817
|||||||.|.||.||.|| |.||||| .||||.|
BL00638___mre 798 TTATGTAGAGCCGGCAGCCGATATGTATAACCTT---------GATAACG 838
BSNT_04068___ 818 TGATCGTTGTTAAC------CGTG--ACG-----TGCCGAC-----TGTC 849
|.|||||.||..|| |.|| ||| ||.|||| .|.|
BL00638___mre 839 TCATCGTCGTCGACAGAACGCTTGATACGGTGGATGTCGACAAGATGGAC 888
BSNT_04068___ 850 GATACAGAGGAGGAAGGATCGTGA 873
||| |||||||||||.||||||
BL00638___mre 889 GAT---GAGGAGGAAGGGTCGTGA 909
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