Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04084 and BL00630
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_04084___ysxE.1.5803.seq
# -bsequence dna-align/BL00630___ysxE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04084___ysxE-BL00630___ysxE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04084___ysxE-BL00630___ysxE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04084___ysxE
# 2: BL00630___ysxE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1107
# Identity: 699/1107 (63.1%)
# Similarity: 699/1107 (63.1%)
# Gaps: 165/1107 (14.9%)
# Score: 1976.5
#
#
#=======================================
BSNT_04084___ 1 ATGGAAGATACCCAATCGGTTCTTCAGGAATACGGACTGACTGCTCAATT 50
|||||||..|.|||.||.|||.|..|.||.|||||.||.||..||.|||.
BL00630___ysx 1 ATGGAAGGCATCCAGTCTGTTTTAAATGAGTACGGTCTTACGCCTGAATA 50
BSNT_04084___ 51 TATTGAGCCTGTCAGTCCTCTTGTTTGGAAAGTGTATACAGACTACGGCA 100
|||.|||.|.||||||.|....||.||||||||||||||.||..||||..
BL00630___ysx 51 TATGGAGTCCGTCAGTTCAAAGGTGTGGAAAGTGTATACGGATCACGGTG 100
BSNT_04084___ 101 TATTTGCCCTGAAAAAATTGAAAGAAGGTCGCGG---CAAG-------CA 140
|||||||.|||||||||||| |||| |||| |.
BL00630___ysx 101 TATTTGCTCTGAAAAAATTG----------GCGGCTTCAAGAAACACCCG 140
BSNT_04084___ 141 TTTTACAGATCATATGGTGGCGATTGAGGAAAAAGGCTTTCGTTCA---- 186
.||.||.||.||.|||.|...|.|.|||||||||||| |.||
BL00630___ysx 141 CTTCACGGAACAGATGATCATGCTGGAGGAAAAAGGC-----TACAGGCA 185
BSNT_04084___ 187 -TTCGTTCCCGTTTACAGAA----CAAATAGCGGTGAGTTTTTCTCAGCA 231
||||||||.||.||..||| ||.| ||.||.|||||..| |||
BL00630___ysx 186 GTTCGTTCCTGTCTATCGAAACCGCACA----GGCGAATTTTTAAC-GCA 230
BSNT_04084___ 232 GGCATACAATACGG---AGATACCTACTATTTAATGCCTTGGCTCCAAT- 277
.|| ||| ||||..||.||||.|.|||||.||||| .|.|
BL00630___ysx 231 AGC--------CGGAGAAGATGTCTGCTATCTCATGCCCTGGCT-TACTC 271
BSNT_04084___ 278 TTGACCAA--GAGGAAGAACGGGATCAGAAACATGCTTATTTATTTAGAG 325
|||| || ||||||||.||||||||.|||||.|..|||.|.||||.||
BL00630___ysx 272 TTGA--AAGGGAGGAAGAGCGGGATCAAAAACACGAATATATGTTTAAAG 319
BSNT_04084___ 326 AAACAGCCCGTCTTCACGAGAGAACCGCGCAGGAACTAAAG--------G 367
|||..||.|.|||||||.||.|.|| |||| |||| |
BL00630___ysx 320 AAATCGCTCTTCTTCACCAGCGGAC------GGAA--AAAGAGCTCGGCG 361
BSNT_04084___ 368 TTAGACGTGATGAGA---TTGAACGTTAT-TACGGGC-AAACGAAAAAAA 412
|.||.||.||.||.| |.|.||..||| .||||.| |||||.|||
BL00630___ysx 362 TGAGGCGGGAAGAAATACTCGGACACTATGAACGGACAAAACGGAAA--- 408
BSNT_04084___ 413 AGTGGGAAC------AAGATAAAATTTTCTATG-AGCAGT--TTGTGGAT 453
||||||| ||.|.||| |||| ||||.| |..||
BL00630___ysx 409 --TGGGAACAGCAAAAACAGAAA------TATGAAGCATTCATCATG--- 447
BSNT_04084___ 454 AGAGCGGAGAAGGAGTGGTACCTTTCTCCTTTTGAACTCCA---GGCCAT 500
|.||||||.||.||.|||||..|.||.||.||..|.||.|| ||||||
BL00630___ysx 448 AAAGCGGAAAACGAATGGTATATGTCCCCGTTCCAGCTTCAGGCGGCCAT 497
BSNT_04084___ 501 AACCTATTTTTCAGAAACCATTTCCGCGGTGAATTTTGCGCTGGAACGGT 550
.|||||...|||.||.||.||.||.|...|.||||||||.|..||..
BL00630___ysx 498 ---GTATTTCAAAGAGACGATATCAGCTGCCGACTTTGCGCTCGCCCGCC 544
BSNT_04084___ 551 TGGAGGACTGGTATGAGTCTGCAAAG---GAAAAAGACGT-TTCAAGGGT 596
|.||.||.|||.|||| .||.|.| |||||||| || |.|.||..|
BL00630___ysx 545 TTGAAGATTGGCATGA---AGCCATGAGAGAAAAAGA-GTCTGCCAGAAT 590
BSNT_04084___ 597 TGTAATGAACCAC-GGCAGCCTGTCTATACACCATTTTCTGTATAATGAT 645
.||..|.|||||| |||| ||||||..|.|..||||||||.|||||.|||
BL00630___ysx 591 GGTCTTAAACCACGGGCA-CCTGTCCGTTCGGCATTTTCTCTATAACGAT 639
BSNT_04084___ 646 GCCGGGACCGGATATTTTACAAACTTCGAAAGAGCATCTGTCGG----TC 691
.||||.||.||.||.|||||.|||||.||.|.|| ||| |.
BL00630___ysx 640 ACCGGAACGGGTTACTTTACGAACTTTGAGAAAG-------CGGGACATG 682
BSNT_04084___ 692 CGCCGC---AAAACGACCTGCTCGGCTTTTATACAAAAATG-TTCAGAGG 737
|||||| .|||.||.||..|||..||||.|||.|.|||| ||.|||
BL00630___ysx 683 CGCCGCCTGCAAATGATCTCATCGTATTTTTTACTAGAATGTTTAAGA-- 730
BSNT_04084___ 738 CTTTCCGAAAGC------TTGTCCGGAATGCGTCGAATGGTTTTATGGAT 781
||||..| .||..|||||||.||..|.|||||||||...|
BL00630___ysx 731 -----CGAACCCCGTTATGTGCACGGAATGTGTAAACTGGTTTTATACGT 775
BSNT_04084___ 782 AT-ACGAAATC-ATTCCCTTTGCGTGAAGCGGAAGTCAGCCTTTTTCTCA 829
|| ||.|..|| || ||||||||.||.|..|||.||.||.|.||.||||
BL00630___ysx 776 ATCACAATGTCTAT--CCTTTGCGGGAGGAAGAAATCGGCTTATTCCTCA 823
BSNT_04084___ 830 GCTATATGGCATATCCGGCAGCCATGTA--CAAGGTGCTGAACGGTTATC 877
||||||||||.||.|||| |.|.|||| |...||.||||||.|.|| |
BL00630___ysx 824 GCTATATGGCTTACCCGG--GGCCTGTATTCGGCGTACTGAACCGCTA-C 870
BSNT_04084___ 878 AAAC-TGGGAAAAGACAGCAT----GAAAAAGAGGAATGTACACAATTAT 922
.||| ||.|||..|.| | ||||||||.|..||||||....|.|
BL00630___ysx 871 GAACATGAGAAGGGGC----TCGGGGAAAAAGAAGCCTGTACAAGGCTTT 916
BSNT_04084___ 923 TAAAGGCTTATTGGCAAATGAAAAATATAGAGCCGTTTGTGATGAAAATC 972
|||||||.||.||||||||||||||....||||||.|||||||||..||.
BL00630___ysx 917 TAAAGGCGTACTGGCAAATGAAAAACGCTGAGCCGCTTGTGATGAGCATT 966
BSNT_04084___ 973 CATCAGATTGAACAAGAGAAAAAATTTCAGGCTGAAAACGAGTCCACGTC 1022
||..|||..|||.||.|.|.||||.|.||||..||||..||||||.|.||
BL00630___ysx 967 CACGAGACGGAAGAAAACAGAAAACTGCAGGAAGAAACAGAGTCCCCATC 1016
BSNT_04084___ 1023 TTAA--- 1026
.|.|
BL00630___ysx 1017 ATCATGA 1023
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