Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04089 and BL00626
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:09
# Commandline: needle
# -asequence dna-align/BSNT_04089___hemD.1.5803.seq
# -bsequence dna-align/BL00626___hemD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04089___hemD-BL00626___hemD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04089___hemD-BL00626___hemD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04089___hemD
# 2: BL00626___hemD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 866
# Identity: 554/866 (64.0%)
# Similarity: 554/866 (64.0%)
# Gaps: 151/866 (17.4%)
# Score: 1699.0
#
#
#=======================================
BSNT_04089___ 1 ATGGAAAATGATTTTCCGTTGAAAGGAAAAACAGTACTTGTCACCCGGAA 50
|||.|..|||||.||||.||..|.|||||.|.|||.||.||||||||.||
BL00626___hem 1 ATGAAGCATGATCTTCCTTTAGAGGGAAAGAAAGTGCTCGTCACCCGCAA 50
BSNT_04089___ 51 TAAGGCACAGGCAACATCATTTCA-GCAAAAAGTGGAGGCGCTTGGCGGT 99
|||.||.||.||...||| ||||| |.||||.||||||||..|.|||||.
BL00626___hem 51 TAAAGCGCAAGCCCAATC-TTTCAGGGAAAAGGTGGAGGCTTTGGGCGGG 99
BSNT_04089___ 100 AAAGCGGTTTTAACCTCTTTGATTACGTTTCG--CCGCGCTTTGCCGAAT 147
.||||.||||||||.||.||||||.||||||| ||||.||| |||
BL00626___hem 100 GAAGCTGTTTTAACGTCATTGATTTCGTTTCGGCCCGCCCTT--CCG--- 144
BSNT_04089___ 148 GATGTTGCGGAACAGG---------TAAGAGAGGACCTTG---CCGCGCC 185
.|.||||||| |..|||..||.|||| ..|||
BL00626___hem 145 ------CCAGAACAGGCCCGGCGCTTTCGAGCAGATCTTGAAAGTGCG-- 186
BSNT_04089___ 186 AGGCTGGCTTGTTTTTACAAGTGTGAACGGGGCAGACTTCTTTTTTTCTT 235
|.||||||||||||||||||.||||||||||||.|.|||||||||||||
BL00626___hem 187 -GACTGGCTTGTTTTTACAAGCGTGAACGGGGCAAAATTCTTTTTTTCTT 235
BSNT_04089___ 236 ATCTGAAGGAAAATCAGC----TT-----ATTCTCCCTGCGCATAAA--- 273
||.|.||||| .|| || ||.|||| |||||.||
BL00626___hem 236 ATTTAAAGGA-----CGCCGGGTTGTGCGATCCTCC---CGCATCAAAGG 277
BSNT_04089___ 274 --AAAATTGCAGCAGTCGGTGAAAAAACCGCCCGCCGTTTACAAACGCAT 321
||..||||.||.||||||||||||||.|||||...||| .|||..
BL00626___hem 278 CGAAGGTTGCTGCTGTCGGTGAAAAAACAGCCCGGTATTT----GCGCGA 323
BSNT_04089___ 322 AACG----TATCGGTTGATGTGATGCCACAGGAG-TATA--TTGCTGAAC 364
.|.| |.||.||.|||.||||||| |||| |||| |.|||||||
BL00626___hem 324 CAGGGGTCTTTCTGTCGATCTGATGCC---GGAGTTATACGTGGCTGAAC 370
BSNT_04089___ 365 AATTGGCTGACGCTCTTAAGCAGCATGCTGAACCGGGGGAGCCCATTAC- 413
|.|||||.||.||.||||||||..|||| .|||...|||.||
BL00626___hem 371 ATTTGGCGGAGGCACTTAAGCAAAATGC--------CGGACGTCATGACA 412
BSNT_04089___ 414 -------CGTAATGAAAGGGAATTTGTCACGTGATGTGAT----AAAACA 452
|||..|.|||||||||||.||.||.||.||.|| |||||
BL00626___hem 413 AAGTGGTCGTTTTAAAAGGGAATTTATCCCGGGACGTCATCAAGAAAAC- 461
BSNT_04089___ 453 AGAGCTTGTC-CCGCTCGGTTTTGAAGTTAAGGAATGGGTTCTCTACGAA 501
|.|.|| ||.|||||..||.|||||..|||||||.||.|.||.|||
BL00626___hem 462 ----CATCTCTCCTCTCGGAATTCAAGTTTCGGAATGGATTTTGTATGAA 507
BSNT_04089___ 502 ACGATTCCAGATGAAGAAGGCATCGAGGCACTGAAAGACGCTG------- 544
||..|.|..||||||...||.||...||..|||||.||.||.|
BL00626___hem 508 ACCGTGCGTGATGAAAGGGGAATTCTGGACCTGAAGGAAGCAGCAAAGCA 557
BSNT_04089___ 545 CGGGTCAATATTCCTTTGACTATGTAACATTTACGAGTTCATCAACCGTA 594
||.| ||.|||||.|.|||.||.|||||.|||||.||.||.|||
BL00626___hem 558 CGCG-------TCTTTTGATTTTGTGACGTTTACCAGTTCTTCGACGGTA 600
BSNT_04089___ 595 CATACGTTTATG--CATGTCTTGG---GAGAAGA-ATTA----------A 628
|||||.||.||| ||| ||| | |||.||| .||| |
BL00626___hem 601 CATACATTCATGTCCAT-TCT--GAAAGAGGAGAGCTTAGCGTGGGCCGA 647
BSNT_04089___ 629 AAAAGTGGAAGGCGAATGGGACGGCTTGTATCAGCATTGGGCCTTTAACA 678
||| |||..|||||||||.|||.|..||.||||||||.|||
BL00626___hem 648 AAA----------GAACCGGACGGCTTTTATTACGATCGGGCCTTTGACA 687
BSNT_04089___ 679 AATGATGCCCT-TCTGACGTACGGCATCACATCGCATACGCCTGA----T 723
||..|.||.|| ||.||| |||||.||..||||..|||.|||.|| |
BL00626___hem 688 AAGAAGGCGCTGTCGGAC-TACGGAATTCCATCATATATGCCGGACGTCT 736
BSNT_04089___ 724 ACATTTACAATAGATGGCATGCTTGGGTTAATGTGCAGCATGTCAAGAGA 773
| ||||||.||.||.|||||..|...|||||||.||||.||||||.|
BL00626___hem 737 A----TACAATCGACGGAATGCTGCGCGAAATGTGCCGCATTTCAAGAAA 782
BSNT_04089___ 774 GGAAGAGAGAATATGA 789
||.||| ||||
BL00626___hem 783 GGGAGA------ATGA 792
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