Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01133 and BL00589
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_01133___ligA.1.5803.seq
# -bsequence dna-align/BL00589___ligA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01133___ligA-BL00589___ligA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01133___ligA-BL00589___ligA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01133___ligA
# 2: BL00589___ligA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2029
# Identity: 1572/2029 (77.5%)
# Similarity: 1572/2029 (77.5%)
# Gaps: 47/2029 ( 2.3%)
# Score: 5987.5
#
#
#=======================================
BSNT_01133___ 1 ATGGACAAAGAAACAGCGAAGCAGCGGGCAGAAGAACTGCGCCGCA-CCA 49
|||||.||||||.||||.||.|..||.|..|||.|||||| ..||| ..|
BL00589___lig 1 ATGGAAAAAGAAGCAGCTAAACGCCGTGTGGAACAACTGC-ATGCATTGA 49
BSNT_01133___ 50 TCAACAAGTATAGCTATGAATATTACACCCTAGATGAACCGAGCGTCCCT 99
|.|||||.||.|.|||.||||||.|||||||.||.||.||.|||||.|||
BL00589___lig 50 TTAACAAATACAACTACGAATATCACACCCTTGACGATCCAAGCGTGCCT 99
BSNT_01133___ 100 GATGCGGAATATGACAGATTGATGCAGGAGCTGATCGCGATCGAGGAGGA 149
|||.|.||||||||||...|||||.|.||||||||.||..|.||.||.||
BL00589___lig 100 GATTCCGAATATGACAAGCTGATGAAAGAGCTGATTGCTCTTGAAGAAGA 149
BSNT_01133___ 150 GCATCCAGATCTCAGAACGCCTGACTCTCCTACGCAGCGCGTCGGCGGAG 199
||||||.||.||.|.||||||.|||||||||.|.||||||||||||||||
BL00589___lig 150 GCATCCCGACCTGAAAACGCCGGACTCTCCTTCTCAGCGCGTCGGCGGAG 199
BSNT_01133___ 200 CCGTGCTTGAAGCGTTTCAAAAAGT-CACCCACGGCACA-----CCGATG 243
||||..|.||.||.||||||||||| || ||||| ||||||
BL00589___lig 200 CCGTTTTGGACGCCTTTCAAAAAGTGCA------GCACAAAACGCCGATG 243
BSNT_01133___ 244 CTCAGTCTGGGCAACGCCTTTAATGCTGATGATCTTCGTGATTTCGACCG 293
||.||.||.||||||||.|||||||..||.|||||.||.||.||.|||||
BL00589___lig 244 CTGAGCCTCGGCAACGCGTTTAATGAAGAAGATCTGCGCGACTTTGACCG 293
BSNT_01133___ 294 CCGTGTGCGCCAAGCCGTCGGTGACGATGTGGCGTATAATGTGGAGCTGA 343
|||.||.|||||.||.|||||.||| ||.|..||.||.||.|||.|.|
BL00589___lig 294 CCGCGTCCGCCAGGCGGTCGGAGAC---GTTGAATACAACGTCGAGTTTA 340
BSNT_01133___ 344 AAATAGACGGTCTTGCTGTTTCTCTCCGTTATGAAGACGGC-TATTTTGT 392
||||||||||||||||||||||.||.||.||||||.||||| || |||||
BL00589___lig 341 AAATAGACGGTCTTGCTGTTTCACTGCGCTATGAAAACGGCGTA-TTTGT 389
BSNT_01133___ 393 CAGAGGGGCCACCCGAGGTGACGGAACGACGGGAGAGGATATTACGGAGA 442
||||||.||.||..||||.|||||.||||||||.||||||||||||||.|
BL00589___lig 390 CAGAGGTGCGACGAGAGGCGACGGTACGACGGGCGAGGATATTACGGAAA 439
BSNT_01133___ 443 ATCTGAAGACGATTCGCAATATCCCCCTCAAAATGAACCGTGAGCTGTCG 492
||.||||.||.||..|.||.||.|||||||.||||||.||.||.||.||.
BL00589___lig 440 ATTTGAAAACCATCAGAAACATTCCCCTCAGAATGAAACGCGATCTTTCT 489
BSNT_01133___ 493 ATCGAAGTGCGCGGCGAGGCGTATATGCCGAAGCGTTCGTTTGAAGCACT 542
||.||||||||||||||.||.|.||||||||||||.||.||||||...||
BL00589___lig 490 ATTGAAGTGCGCGGCGAAGCTTTTATGCCGAAGCGCTCCTTTGAACTGCT 539
BSNT_01133___ 543 CAATGAGGAACGGATTAAAAATGAGGAAGAACCGTTCGCCAATCCGCGAA 592
.||..|.|..|||||..||..|||.|||||.|||||||||||.|||||.|
BL00589___lig 540 GAACAAAGCGCGGATCGAACGTGATGAAGAGCCGTTCGCCAACCCGCGGA 589
BSNT_01133___ 593 ATGCCGCGGCGGGATCACTTAGGCAGCTCGATCCGAAAATTGCAGCGAAA 642
|.|||||.||.||.|||.|.|||||||||||||||||||||||.||||||
BL00589___lig 590 ACGCCGCTGCCGGTTCATTAAGGCAGCTCGATCCGAAAATTGCCGCGAAA 639
BSNT_01133___ 643 CGAAACCTCGATATCTTCGTCTACAGTATAGCGGAGCTTGACGAGATGGG 692
|||||.|||||||||||||||||||||||||||||||||||.||.|||||
BL00589___lig 640 CGAAATCTCGATATCTTCGTCTACAGTATAGCGGAGCTTGATGAAATGGG 689
BSNT_01133___ 693 TGTGGAGACGCAAAGCCAAGGGCTTGATTTTCTCGACGAACTCGGATTTA 742
.||.||.|||||||||||.||.||.|||||.||||||||||||||.||.|
BL00589___lig 690 CGTTGAAACGCAAAGCCAGGGACTCGATTTCCTCGACGAACTCGGCTTCA 739
BSNT_01133___ 743 AAACGAATCAGGAACGAAAAAAATGCGGCGAC-ATAGAAGAAGTCATTAC 791
||||.|||||.|||.|||||||||||.|| || ||.||||||||||||..
BL00589___lig 740 AAACCAATCATGAAAGAAAAAAATGCAGC-ACGATCGAAGAAGTCATTGA 788
BSNT_01133___ 792 GCTGATCGATGAGCTTCAGGCGAAGCGCGCTGACCTGCCGTATGAAATAG 841
|.|..||||.|||||..||.|.||.|||||.|||||.|||||||||||.|
BL00589___lig 789 GATTGTCGAAGAGCTCAAGACAAAACGCGCCGACCTCCCGTATGAAATCG 838
BSNT_01133___ 842 ACGGCATTGTTATTAAAGTCGATTCTCTCGATCAACAGGAGGAGCTCGGT 891
||||.||.||.||||||||||||||.||.||.||.|||||.||||||||.
BL00589___lig 839 ACGGGATCGTCATTAAAGTCGATTCCCTTGACCAGCAGGAAGAGCTCGGC 888
BSNT_01133___ 892 TTTACGGCGAAAAGCCCGCGCTGGGCCATCGCGTATAAGTTTCCTGCTGA 941
||||||||||||||||||||||||||.|||||.||.|||||||||||.||
BL00589___lig 889 TTTACGGCGAAAAGCCCGCGCTGGGCGATCGCCTACAAGTTTCCTGCCGA 938
BSNT_01133___ 942 AGAGGTCGTGACGAAGCTTCTCGATATCGAATTAAATGTCGGCAGAACGG 991
||||||.||.||||.||||.|.||.||.|||||||..||||||.|.||||
BL00589___lig 939 AGAGGTTGTTACGACGCTTTTGGACATTGAATTAAGCGTCGGCCGGACGG 988
BSNT_01133___ 992 GTGTGATCACGCCGACCGCGATTCTTGAGCCGGTAAAAGTTGCCGGCACA 1041
|.|...|.||.|||||.||||||||.||.||.||||||||.||.||.||.
BL00589___lig 989 GCGCAGTGACCCCGACTGCGATTCTCGAACCTGTAAAAGTGGCGGGAACG 1038
BSNT_01133___ 1042 ACGGTCTCAAGAGCATCCCTTCATAACGAAGATTTAATTAAAGAGAAGGA 1091
||.|||..||||||.||.||.||.||||||||||||||||||||||||||
BL00589___lig 1039 ACCGTCCAAAGAGCTTCTCTCCACAACGAAGATTTAATTAAAGAGAAGGA 1088
BSNT_01133___ 1092 CATTCGGA-TTTTGGATAAGGTTGTCGTCAAAAAAGCGGGCGATATCATC 1140
.| ||.|| |..||||.||.||.|||||||||||.|||||.||.|||||.
BL00589___lig 1089 TA-TCAGACTGCTGGACAAAGTCGTCGTCAAAAAGGCGGGAGACATCATT 1137
BSNT_01133___ 1141 CCGGAAGTTGTGAATGTCCTCGTTGAACAGCGCACAGGAGAAGAAAAGGA 1190
|||||.||.||.||.||||||||.||||||||.||.||..|||||||.||
BL00589___lig 1138 CCGGAGGTCGTCAACGTCCTCGTCGAACAGCGGACGGGCAAAGAAAAAGA 1187
BSNT_01133___ 1191 ATTCAGCATGCCGACGGAATGTCCTGAATGCGGCAGTGAACTCGTCCGGA 1240
|||||.||||||||.||||||.||.||||||||.||.||.||.|||.|.|
BL00589___lig 1188 ATTCAACATGCCGAAGGAATGCCCGGAATGCGGAAGCGAGCTTGTCAGAA 1237
BSNT_01133___ 1241 TCGAAGGAGAAGTGGCGCTTCGCTGCATTAACCCTGAATGTCCGGCGCAA 1290
|||||||||||||.|||||||||||||||||.||.|||||||||||.||.
BL00589___lig 1238 TCGAAGGAGAAGTCGCGCTTCGCTGCATTAATCCGGAATGTCCGGCTCAG 1287
BSNT_01133___ 1291 ATCCGGGAAGGGCTTATCCATTTCGTTTCCCGCAATGCCATGAACATTGA 1340
|||.|||||||.||.||||||||.||||||||.|||||.|||||.||.||
BL00589___lig 1288 ATCAGGGAAGGCCTGATCCATTTTGTTTCCCGGAATGCGATGAATATAGA 1337
BSNT_01133___ 1341 TGGGCTCGGCGAACGAGTGATCACACAGCTGTTTGAGGAAAACCTTGTCC 1390
|||.||||||||.||.||.|||||.||||||||....|||.||||.||||
BL00589___lig 1338 TGGTCTCGGCGAGCGCGTCATCACCCAGCTGTTCCGCGAAGACCTCGTCC 1387
BSNT_01133___ 1391 GCAATGTGGCAGATTTATATAAGCTGACGAAGGAACGAG-TCATCCAGCT 1439
..|||||.||.|||.|.||||||||||||...||.| || |.|||.|.||
BL00589___lig 1388 ATAATGTCGCCGATCTGTATAAGCTGACGCGCGAGC-AGCTGATCAATCT 1436
BSNT_01133___ 1440 CGAGCGCATGGGCGAAAAGTCCACTGAAAACCTGATCAGCTCCATCCAAA 1489
||||||.|||||.||||||||.||.||.|||.|..|.|..||.||..|||
BL00589___lig 1437 CGAGCGGATGGGGGAAAAGTCGACCGACAACTTATTGAATTCGATTGAAA 1486
BSNT_01133___ 1490 AATCAAAAGAA-AATTCGTTAGAGCGCCTGCTGTTTGGGCTTGGCATCCG 1538
|||| .||||| ||.||.||.||.||.||.||.||.||.||.||||||||
BL00589___lig 1487 AATC-GAAGAAGAACTCATTGGAACGGCTTCTCTTCGGACTCGGCATCCG 1535
BSNT_01133___ 1539 TTTTATCGGATCAAAGGCCGCAAAGACGCTTGCCATGCATTTTGAAA-GC 1587
.||.|||||..|.||.||.||.||||||||.||.||||||||||||| ||
BL00589___lig 1536 CTTCATCGGCGCCAAAGCGGCCAAGACGCTGGCGATGCATTTTGAAACGC 1585
BSNT_01133___ 1588 TTGGAGAACCTGAAAAAAGCCTCTAAAGAGGAACTTCTCGCGGTAGATGA 1637
|.||.||.||.||||||||..|.|||||.|||.|..|||..||.|||||
BL00589___lig 1586 -TCGATAAGCTTAAAAAAGCGACAAAAGAAGAATTGATCGAAGTCGATGA 1634
BSNT_01133___ 1638 AATCGGTGAAAAAATGGCTGATGCTGTGATCACCTATTTTCATAAAGAAG 1687
||||||.||.||.|||||.||.||..|..|||||||||||.|.|||||||
BL00589___lig 1635 AATCGGCGACAAGATGGCGGACGCCCTCGTCACCTATTTTGAAAAAGAAG 1684
BSNT_01133___ 1688 AAATGCTTGAA-CTCTTGAATGAACTTCAGGAGCTGGGCGTAAACACGCT 1736
|.||.| |||| ||.|||.|.||.|||.|.||.||.||.||.|||||..|
BL00589___lig 1685 AGATTC-TGAAGCTGTTGGACGAGCTTGAAGAACTCGGGGTCAACACCGT 1733
BSNT_01133___ 1737 CTACAAAGGCCCGAAAAAAGTAAAAGCAGAGGACAGCGACTCTTACTTTG 1786
.||.||||||||||||||||.....||.||.|..|||||.||.||.||||
BL00589___lig 1734 GTATAAAGGCCCGAAAAAAGCGGCCGCTGAAGCGAGCGATTCGTATTTTG 1783
BSNT_01133___ 1787 CCGGTAAAACAATTGTTCTGACAGGAAAGCTGGAAGAGCTGTCAAGAAAC 1836
|.||.|||||.||.||.|||||.||.|||||....|||.||||..|.||.
BL00589___lig 1784 CGGGGAAAACGATCGTCCTGACCGGGAAGCTCAGCGAGATGTCGCGGAAT 1833
BSNT_01133___ 1837 GAAGCCAAAGCGCAAATCGAAGCGCTGGGCGGAAAGCTGACTGGAAGCGT 1886
||.||.||||||.|||||||||||||.||||||||..|.||.||.||.||
BL00589___lig 1834 GACGCGAAAGCGGAAATCGAAGCGCTCGGCGGAAAAATCACAGGCAGTGT 1883
BSNT_01133___ 1887 CAGCAAAAACACAGACTTAGTCATCGCCGGAGAAGCGGCGGGAAGCAAGC 1936
.||||||||.||.||..|.|||||.|||||.||||||||.||.|||||.|
BL00589___lig 1884 AAGCAAAAAAACCGATCTCGTCATTGCCGGCGAAGCGGCAGGCAGCAAAC 1933
BSNT_01133___ 1937 TGACAAAAGCACAAGAGCTGAACATTGAAGTGTGGAATGA--------AG 1978
||.|.|||||..||||.||.|||||.|||||.|||.|||| .|
BL00589___lig 1934 TGGCGAAAGCTGAAGACCTAAACATCGAAGTATGGGATGAGGCAAGACTG 1983
BSNT_01133___ 1979 AACAGTTAATGGGAGAGCTAAAGAAATAA 2007
|.|||| |||||||||||||||
BL00589___lig 1984 ATCAGT--------GAGCTAAAGAAATAA 2004
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