Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02782 and BL00586
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_02782___ymaC.1.5803.seq
# -bsequence dna-align/BL00586___ymaC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02782___ymaC-BL00586___ymaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02782___ymaC-BL00586___ymaC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02782___ymaC
# 2: BL00586___ymaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 803
# Identity: 452/803 (56.3%)
# Similarity: 452/803 (56.3%)
# Gaps: 187/803 (23.3%)
# Score: 1154.5
#
#
#=======================================
BSNT_02782___ 1 ATG-AGAAGATTTTTACTAAATG---TCAT---ATTAGTCTTAGC--CAT 41
||| |||| |||.| |||| .||.||..|.|| ||.
BL00586___yma 1 ATGAAGAA----------AAAAGTACTCATCTACTTGGTGATCGCAGCAG 40
BSNT_02782___ 42 TGTCTTGTTCTTAAGATA-----TGTTCATTACTCAT-----TGG----- 76
|| |.|||| ||| || |||
BL00586___yma 41 TG----------ATGATAAATGGTGT---------ATACAGGTGGTCCGA 71
BSNT_02782___ 77 ------AACCTG----AACCATCAAATC--AGCCAGATACATATTCA--A 112
||||.| |.|.||||.||| .|||.|..|||.||.|| |
BL00586___yma 72 AAAAACAACCCGGGAAAGCTATCAGATCCAGGCCGGGGACAAATACAAGA 121
BSNT_02782___ 113 ATTTCA-------GCAGCTTAGCAGAGAATGAGAGCCCAGCCGATTACGA 155
|.|||| |||| ||.||.||.| .|..||..||.||
BL00586___yma 122 ACTTCAAGGAATTGCAG-------GAAAACGAAA---AAAGCGGCTATGA 161
BSNT_02782___ 156 TATTTCATATAATGAGAAAAAAGGAAGC-AAAGTCTTAATTATGTCTCCG 204
.|||...|||.|.||.|||...|||||| |..|| |||||..|.||.||.
BL00586___yma 162 CATTGATTATCACGAAAAAGCGGGAAGCGACTGT-TTAATCTTTTCGCCC 210
BSNT_02782___ 205 CATGGCGGAAGAATTGAAGGCGGAGTAAGTGAGCTTGTTCGTTATTTCAA 254
|||||.||||||||.|||||||||||.||.||||||||.||...|||.||
BL00586___yma 211 CATGGAGGAAGAATAGAAGGCGGAGTGAGCGAGCTTGTCCGAGCTTTTAA 260
BSNT_02782___ 255 TAATGAATACTCTACATACCTGTTTGAAG-------GGTTG-----AAGT 292
|.||||.||.||.||.||..|.||.|||| ||.|| ||.|
BL00586___yma 261 TGATGATTATTCAACTTATTTATTCGAAGGAAAAAAGGATGAGAACAACT 310
BSNT_02782___ 293 CCCACGATAACCAAACGCTGCACATTACAAGCACCAACTTTGATGAGCCA 342
| |||| ||.||.|||||.|||||.||||||||.|||||.
BL00586___yma 311 C---CGAT---------CTTCATATTACCAGCACAAACTTTGACGAGCCT 348
BSNT_02782___ 343 TTGGCAAAAAAGAAAATCAAGGAGCATCAATATGTGGTGGCTTTTCACGG 392
.|||||....|||||||.||.||.||.|..|||....|.||.||.|||||
BL00586___yma 349 CTGGCATTGCAGAAAATAAAAGAACACCGCTATACCATCGCATTCCACGG 398
BSNT_02782___ 393 ATATAAAGGGGA------GAACAAGAATACGCTTGTCGGGGGAACAGACC 436
.|||...||.|| |.|| ||||||||.||.|||||.|||.
BL00586___yma 399 CTATTCGGGCGACCGTCCGCAC------ACGCTTGTGGGAGGAACGGACA 442
BSNT_02782___ 437 GAAAGCGGGCGAAAATGATTGTGAGAGCCCTTGAGCGGAGA------GGG 480
||||||.|||.|||...||.||.|.|.|.|| ||.| |..
BL00586___yma 443 GAAAGCTGGCAAAAGCCATCGTCAAATCTCT------GAAAAAGTCTGAC 486
BSNT_02782___ 481 TTTTCCGCTGAGTTAGCGTCGTCTAAAAGCGGTC-------TTGCTGGAT 523
||||||||.||.||.| |.||||.||.| ||||.|||
BL00586___yma 487 TTTTCCGCAGAATTGG-------TCAAAGTGGACGGGAAATTTGCCGGA- 528
BSNT_02782___ 524 TGAATGC---CGAAAACATTAATAACCAAGGGGAAACGGGGCTAAGTATC 570
|.||| .||||||||.|||||..||.|..|.||.||..|.||..|.
BL00586___yma 529 --ACTGCTGAGGAAAACATCAATAATGAAAGCCAGACAGGAATGAGCGTG 576
BSNT_02782___ 571 CAGCTGGAAATCAGC-CGTGAGCAGAGAGAAGCATTTTTTGATGATTTTT 619
|||||.||||||||| || |..|||||..|||..|||||.||.||.||||
BL00586___yma 577 CAGCTTGAAATCAGCACG-GCTCAGAGGAAAGAGTTTTTCGAAGACTTTT 625
BSNT_02782___ 620 ATTATAAAAATAGAAAATACACAA-----AGAACAGT--GAATTTTATGC 662
..||||||.|.||..||.|.|||| ||||||.| ||| .
BL00586___yma 626 CCTATAAAGAGAGGGAAGAGACAAAAACGAGAACATTCCGAA-------A 668
BSNT_02782___ 663 TTATGTCAGTGCGATC--AAAGGTG-TCCTGGAAAAA----GAGTATTTG 705
.|||||||..|||.|| .|||||| |.|.|||.|.| ||
BL00586___yma 669 ATATGTCAAGGCGGTCCGCAAGGTGCTGCAGGACAGATGCTGA------- 711
BSNT_02782___ 706 TAA 708
BL00586___yma 711 --- 711
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