Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03149 and BL00582
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:49
# Commandline: needle
# -asequence dna-align/BSNT_03149___sodF.1.5803.seq
# -bsequence dna-align/BL00582___sodF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03149___sodF-BL00582___sodF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03149___sodF-BL00582___sodF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03149___sodF
# 2: BL00582___sodF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 902
# Identity: 603/902 (66.9%)
# Similarity: 603/902 (66.9%)
# Gaps: 121/902 (13.4%)
# Score: 1912.0
#
#
#=======================================
BSNT_03149___ 1 ATGAAACGTGAATCTTATCAAACGG-----AGATGTTCAATTGGTGTGAA 45
.||||..|.||..|||| |||| | |.||..||| |||....||
BL00582___sod 1 TTGAACAGAGATGCTTA-CAAA--GAAAAAATATCGTCA--TGGGCCAAA 45
BSNT_03149___ 46 GCCCTGAAAGATCAGATTCAAAAGCGAGGA--CAGCTTGA-----CCAGT 88
|.|||||||||.|||||..|| ||.|| |..|||.| |||.|
BL00582___sod 46 GACCTGAAAGACCAGATGAAA----GATGATCCTTCTTTAGAAAGCCATT 91
BSNT_03149___ 89 TTGAAGA------TCAA--ATCGACAAGATGATTGAGGCTC-TGGAAGAT 129
|.|||.| |||| ||.| |||||| .||| ||
BL00582___sod 92 TAGAAAAACTTTTTCAATCATTG----GATGAT----CCTCGTG------ 127
BSNT_03149___ 130 GACCAAACAACAGAAGAAGATTGGTATAAACAGGCCGCTGCCCTTTACCG 179
|.||.|||.|.||.||||||.|.|||||.|..|||.|.||.|.
BL00582___sod 128 -------CGACCGAACAGGAATGGTATGAGCAGGCAGAAGCCGTGTATCA 170
BSNT_03149___ 180 GGATAT-TACAGAATCAGATGATACAAGTGAA--AGACGCGCA--TAT-- 222
.|..|| |.|.| ||| ||||.|...|.|| ||.|..||| .||
BL00582___sod 171 AGCCATCTCCCG---CAG-TGATGCGTCTCAAGCAGGCCGGCAGCCATTC 216
BSNT_03149___ 223 ------GTCCCTAT---AGGGAAACACGTGCTGCCAAAGCTTCCTTACAA 263
||.||.|| |||..|.|.| |||||||..||.||.|||..
BL00582___sod 217 AGAACAGTGCCGATCGGAGGCCATCGC---CTGCCAAGCCTGCCCTACTC 263
BSNT_03149___ 264 ATACTCCGCCTTAGAACCTTATATTTCACGCGATATTATGGTCCTTCATC 313
.||.||.|||.|.||.||.|||||||||...||.||||||.|.|||||||
BL00582___sod 264 GTATTCAGCCCTTGAGCCCTATATTTCAAAAGAAATTATGTTTCTTCATC 313
BSNT_03149___ 314 ATACAAAACATCATCAAAGCTATGTCGATGGCCTGAACAAAGCAGAATCA 363
|||||||||||||.||||||||||||||.||..||||||.|||.|||..|
BL00582___sod 314 ATACAAAACATCACCAAAGCTATGTCGACGGTTTGAACAGAGCTGAAAAA 363
BSNT_03149___ 364 GAGCTTAAAAAAGCGAGAGCAA--CAAAGAATTATGAC----TTAATCAC 407
||.||..|.|||||||| |||| ||||.|.|| |||| ||||
BL00582___sod 364 GAACTGCAGAAAGCGAG-GCAAACCAAACAGTT-TGACCTCGTTAA---- 407
BSNT_03149___ 408 TCATTGGGAAAGAGAGCTTGCGTTCCATGGAGCAGGCCATTATTTGCACA 457
.|||||||||||||||||.||.|||||.|||||.||.||.||||||||.|
BL00582___sod 408 CCATTGGGAAAGAGAGCTCGCCTTCCACGGAGCCGGGCACTATTTGCATA 457
BSNT_03149___ 458 GTATTTTTTGGTTTTCTATGCATCCAAACGGAAAACGGCGTCCTACAGGG 507
..||.|||||||...|.|||||.|||||.||||||.|.||.||.|||||.
BL00582___sod 458 CGATATTTTGGTACGCGATGCACCCAAAAGGAAAAAGACGGCCGACAGGC 507
BSNT_03149___ 508 GCATTGTTCCAAATGATAGACCTTTCATTTGGAAGCTATTCCGCTTTTAA 557
|.||||.|..|.|||||..|||.||||||.||.||||||||.||.|||||
BL00582___sod 508 GAATTGCTGGAGATGATCAACCGTTCATTCGGCAGCTATTCGGCCTTTAA 557
BSNT_03149___ 558 AGAACATTTTACCCAGGCCGCTAAAAAAGTGGAAGGCGTCGGCTGGGCCA 607
||||||.|||.||.|.||.||.||||||||||||||||||||||||||.|
BL00582___sod 558 AGAACACTTTTCCGAAGCGGCGAAAAAAGTGGAAGGCGTCGGCTGGGCGA 607
BSNT_03149___ 608 TTCTGGTCTGGGCACCTCGATCAGGACGGC-TGGAGATTTTAACGGCAGA 656
|.||.||||||||.||.||.|| |.||.|| ||||.|||.|.|..|||||
BL00582___sod 608 TCCTCGTCTGGGCGCCGCGTTC-GCACCGCTTGGAAATTCTGATCGCAGA 656
BSNT_03149___ 657 AAAACACCAG---------CAATGGGATGTGATCCCCCTTTTACCGCTTG 697
||||||.||| ||||||||||||||||||||..|.|||||.|
BL00582___sod 657 AAAACATCAGCTGATGAGCCAATGGGATGTGATCCCCCTGCTCCCGCTCG 706
BSNT_03149___ 698 ACGTATGGGAGCATGCCTACTATTTGCAATACAAAAATGACCGGGCCAGC 747
|.|||||||||||.||.||.||..|.|||||.||||||||...|||.|..
BL00582___sod 707 ATGTATGGGAGCACGCATATTACCTTCAATATAAAAATGAAAAGGCAAAA 756
BSNT_03149___ 748 TATGTCGATCACTGGTGGAATGTCGTGGATTGGCGCGAGGCTGAAAAACG 797
||.||||||.|.||||||||||||||.||.|||.|.|||.||||||..||
BL00582___sod 757 TACGTCGATAATTGGTGGAATGTCGTTGACTGGAGAGAGCCTGAAAGGCG 806
BSNT_03149___ 798 TTTTG----AGCAGGCAAAAGAAG-TCGTT---TGGAAGC---TCT-ATT 835
.|||| |||| ||| .|||| |||.||| ||| |
BL00582___sod 807 ATTTGCGTCAGCA--------AAGCGCGTTTTATGGGAGCCGTTCTGA-- 846
BSNT_03149___ 836 AA 837
BL00582___sod 846 -- 846
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