Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02374 and BL00560
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:55
# Commandline: needle
# -asequence dna-align/BSNT_02374___ykuV.1.5803.seq
# -bsequence dna-align/BL00560___ykuV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02374___ykuV-BL00560___ykuV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02374___ykuV-BL00560___ykuV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02374___ykuV
# 2: BL00560___ykuV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 467
# Identity: 365/467 (78.2%)
# Similarity: 365/467 (78.2%)
# Gaps: 28/467 ( 6.0%)
# Score: 1454.5
#
#
#=======================================
BSNT_02374___ 1 ATGAAATTACGTCAGCCCATGCCGGAATTGACGGGAGAAAAAGCTTGGTT 50
|||||||||||||||||.|||||||||.||||.||.|.|||||..|||||
BL00560___yku 1 ATGAAATTACGTCAGCCGATGCCGGAACTGACCGGCGCAAAAGAGTGGTT 50
BSNT_02374___ 51 AAATGGTGAAGTGACGAGAGAGCAATTGATTGGGGAAAAGCCGACGCTTA 100
|||.||.||||||||.|.||||||..|.||.||.|||||||||||..|.|
BL00560___yku 51 AAACGGAGAAGTGACAAAAGAGCAGCTTATAGGAGAAAAGCCGACATTAA 100
BSNT_02374___ 101 TTCATTTCTGGTCCATCAGCTGCCACTTGTGCAAAGAAGCGATGCCGCAA 150
|||||||.|||||||||||||||||||||||||||||.||||||||.||.
BL00560___yku 101 TTCATTTTTGGTCCATCAGCTGCCACTTGTGCAAAGAGGCGATGCCCCAG 150
BSNT_02374___ 151 GTGAATGAATTTCGTGA----TAAATATCA-AGATCAGCTGAATGTTGTA 195
||.||||||||.||.|| || || .|||.|.||.||.||.||.
BL00560___yku 151 GTCAATGAATTCCGCGACCGCTA-----CAGCGATAAACTAAACGTGGTG 195
BSNT_02374___ 196 GCTGTACACATGCCCCGTTCCGAAGATGATCTTGACCTTG-GTAAAATTA 244
||.||.||.|||||.|||||.|||||.|||.|.|| |||| .||||||.|
BL00560___yku 196 GCCGTGCATATGCCGCGTTCAGAAGACGATTTAGA-CTTGAATAAAATCA 244
BSNT_02374___ 245 AAGAAACAGCTGCTGAACACGATATCACTCAGCCGATTTTTGTTGACAGT 294
|||||...||.||||||||.||||||||||||||.||||||||||||||.
BL00560___yku 245 AAGAAGTTGCCGCTGAACATGATATCACTCAGCCTATTTTTGTTGACAGC 294
BSNT_02374___ 295 GACCAT--GCTTTAACCGATTCATTTGAAAATGAATATGTACCTGCATAT 342
|||||| || |.||.||..|.|||||.|||||||||||.|||||.|||
BL00560___yku 295 GACCATAAGC--TGACTGACGCTTTTGAGAATGAATATGTCCCTGCTTAT 342
BSNT_02374___ 343 TATGTGTTTGATAAAACAGGACAGCTCCGTCACTTCCAAGCCGGCGGGAG 392
||.||||||||.||||||||.|||||.||.||.||.|||||.||.||.||
BL00560___yku 343 TACGTGTTTGACAAAACAGGCCAGCTTCGCCATTTTCAAGCTGGAGGCAG 392
BSNT_02374___ 393 CGGTATGAAAATGCTTGAAAAACGTGTGAACCGCGTTCTGGCTGAAACGG 442
|||.|||||||||||.|||||||||||||||||||||||.||.|||||.|
BL00560___yku 393 CGGAATGAAAATGCTCGAAAAACGTGTGAACCGCGTTCTTGCCGAAACAG 442
BSNT_02374___ 443 AATAG------------ 447
||.||
BL00560___yku 443 AACAGTCTGCTGAATAA 459
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