Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02376 and BL00559

See Amino acid alignment / Visit BSNT_02376 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:55
# Commandline: needle
#    -asequence dna-align/BSNT_02376___rok.1.5803.seq
#    -bsequence dna-align/BL00559___rok.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02376___rok-BL00559___rok.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02376___rok-BL00559___rok.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02376___rok
# 2: BL00559___rok
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 626
# Identity:     430/626 (68.7%)
# Similarity:   430/626 (68.7%)
# Gaps:          85/626 (13.6%)
# Score: 1542.5
# 
#
#=======================================

BSNT_02376___      1 ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGA     50
                     ||||||||.||.||.|||||.|||||.||..|.|||||.||..|.||.||
BL00559___rok      1 ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTAGAGCAGCTGAACGA     50

BSNT_02376___     51 AGCTGAAGTGAAAGTCATTCGTGAATATCAAATTGAACGTGATAAAATAT    100
                     .||||||||.||.||.|||.|.||.|||||||||||.||.|||||.||||
BL00559___rok     51 GGCTGAAGTTAAGGTGATTAGGGAGTATCAAATTGAGCGGGATAACATAT    100

BSNT_02376___    101 ACGCAAAATTAAGAGAGCTGGAC-AGAAATGGA-AGCCCTTCC-------    141
                     |.||||         |||||  | .|||.|||| .|.||.|||       
BL00559___rok    101 ATGCAA---------AGCTG--CGTGAATTGGATCGTCCATCCAGCTTTA    139

BSNT_02376___    142 --GAAATCAAAAAGGATTTCCGTTCTGA----AAAAAAACCTGACTCTCT    185
                       ||.|..|||||.|||||.||..|.||    ||||    ||||.|||||
BL00559___rok    140 ATGATACAAAAAAAGATTTTCGCCCGGAGCGTAAAA----CTGAATCTCT    185

BSNT_02376___    186 GCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCT---------    226
                     .||.|||.|.|||||..|.||.||.|||||.||.|..||||         
BL00559___rok    186 CCCTGTTTTAGCTGAATTGGCTGCACAGGAGATGAAGAGCTACCAGCAAC    235

BSNT_02376___    227 ---------ATCAGCCGCAATCA------------CAGCAGCAGTCTGTT    255
                              |.|||||||||.||            |||||||||.||..|
BL00559___rok    236 AGCAGCAACAGCAGCCGCAAGCATCTCAAAAGAACCAGCAGCAGACTTCT    285

BSNT_02376___    256 CAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGG    305
                     |.|         |||   |..|||||.||.||||||||.||.|||||.||
BL00559___rok    286 CCG---------CAA---ACCTCCTCACTGCCTGCCGGAATTCCAGATGG    323

BSNT_02376___    306 AACAACACGAAGAAGAAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTA    355
                     |||.|||.|..|.|||||.||.||.|||.|.||.||.||||||||.||.|
BL00559___rok    324 AACGACAAGGCGCAGAAGGGGTACAGCACGTCCAGGCTCAAAAGCTGCAA    373

BSNT_02376___    356 AGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGGCGATT    405
                     |..||||||||||.||.||||||||||||||||||||.||.|||||.||.
BL00559___rok    374 AATTGCGTGAAGCGGCGATTAAAACATTAAAACGCCATAATGCGGCCATC    423

BSNT_02376___    406 AAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAAT    455
                     ||.|||||.||.|||||||||||.||.||||||||.|||||.|||||.||
BL00559___rok    424 AAAAGCTCCGAACTTCAAAAAGAAATCGAAAAAGAGAGCGGACTTGAGAT    473

BSNT_02376___    456 CCCTAATATGACAACATTTATGCAAAGCTTAATTAAAATGTACCCGGAAG    505
                     |||||||||||||||.||||||||||||.|.|||||||||||||||||||
BL00559___rok    474 CCCTAATATGACAACCTTTATGCAAAGCCTGATTAAAATGTACCCGGAAG    523

BSNT_02376___    506 TGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCT    555
                     |.|||||.|||||.|||||.||.||.||.|||||||||||.||   .|||
BL00559___rok    524 TCAAAAAACCATACCGCGGTCAATATATATTAGAGGGTGAGAT---TTCT    570

BSNT_02376___    556 GCAGA-----ATCAGCAAATGAATAA    576
                     .|.||     |.||||||..|     
BL00559___rok    571 ACTGAGACAGAGCAGCAATAG-----    591


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