Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02376 and BL00559
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:55
# Commandline: needle
# -asequence dna-align/BSNT_02376___rok.1.5803.seq
# -bsequence dna-align/BL00559___rok.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02376___rok-BL00559___rok.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02376___rok-BL00559___rok.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02376___rok
# 2: BL00559___rok
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 626
# Identity: 430/626 (68.7%)
# Similarity: 430/626 (68.7%)
# Gaps: 85/626 (13.6%)
# Score: 1542.5
#
#
#=======================================
BSNT_02376___ 1 ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGA 50
||||||||.||.||.|||||.|||||.||..|.|||||.||..|.||.||
BL00559___rok 1 ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTAGAGCAGCTGAACGA 50
BSNT_02376___ 51 AGCTGAAGTGAAAGTCATTCGTGAATATCAAATTGAACGTGATAAAATAT 100
.||||||||.||.||.|||.|.||.|||||||||||.||.|||||.||||
BL00559___rok 51 GGCTGAAGTTAAGGTGATTAGGGAGTATCAAATTGAGCGGGATAACATAT 100
BSNT_02376___ 101 ACGCAAAATTAAGAGAGCTGGAC-AGAAATGGA-AGCCCTTCC------- 141
|.|||| ||||| | .|||.|||| .|.||.|||
BL00559___rok 101 ATGCAA---------AGCTG--CGTGAATTGGATCGTCCATCCAGCTTTA 139
BSNT_02376___ 142 --GAAATCAAAAAGGATTTCCGTTCTGA----AAAAAAACCTGACTCTCT 185
||.|..|||||.|||||.||..|.|| |||| ||||.|||||
BL00559___rok 140 ATGATACAAAAAAAGATTTTCGCCCGGAGCGTAAAA----CTGAATCTCT 185
BSNT_02376___ 186 GCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCT--------- 226
.||.|||.|.|||||..|.||.||.|||||.||.|..||||
BL00559___rok 186 CCCTGTTTTAGCTGAATTGGCTGCACAGGAGATGAAGAGCTACCAGCAAC 235
BSNT_02376___ 227 ---------ATCAGCCGCAATCA------------CAGCAGCAGTCTGTT 255
|.|||||||||.|| |||||||||.||..|
BL00559___rok 236 AGCAGCAACAGCAGCCGCAAGCATCTCAAAAGAACCAGCAGCAGACTTCT 285
BSNT_02376___ 256 CAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGG 305
|.| ||| |..|||||.||.||||||||.||.|||||.||
BL00559___rok 286 CCG---------CAA---ACCTCCTCACTGCCTGCCGGAATTCCAGATGG 323
BSNT_02376___ 306 AACAACACGAAGAAGAAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTA 355
|||.|||.|..|.|||||.||.||.|||.|.||.||.||||||||.||.|
BL00559___rok 324 AACGACAAGGCGCAGAAGGGGTACAGCACGTCCAGGCTCAAAAGCTGCAA 373
BSNT_02376___ 356 AGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGGCGATT 405
|..||||||||||.||.||||||||||||||||||||.||.|||||.||.
BL00559___rok 374 AATTGCGTGAAGCGGCGATTAAAACATTAAAACGCCATAATGCGGCCATC 423
BSNT_02376___ 406 AAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAAT 455
||.|||||.||.|||||||||||.||.||||||||.|||||.|||||.||
BL00559___rok 424 AAAAGCTCCGAACTTCAAAAAGAAATCGAAAAAGAGAGCGGACTTGAGAT 473
BSNT_02376___ 456 CCCTAATATGACAACATTTATGCAAAGCTTAATTAAAATGTACCCGGAAG 505
|||||||||||||||.||||||||||||.|.|||||||||||||||||||
BL00559___rok 474 CCCTAATATGACAACCTTTATGCAAAGCCTGATTAAAATGTACCCGGAAG 523
BSNT_02376___ 506 TGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCT 555
|.|||||.|||||.|||||.||.||.||.|||||||||||.|| .|||
BL00559___rok 524 TCAAAAAACCATACCGCGGTCAATATATATTAGAGGGTGAGAT---TTCT 570
BSNT_02376___ 556 GCAGA-----ATCAGCAAATGAATAA 576
.|.|| |.||||||..|
BL00559___rok 571 ACTGAGACAGAGCAGCAATAG----- 591
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