Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02387 and BL00555
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:55
# Commandline: needle
# -asequence dna-align/BSNT_02387___mobB.1.5803.seq
# -bsequence dna-align/BL00555___mobB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02387___mobB-BL00555___mobB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02387___mobB-BL00555___mobB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02387___mobB
# 2: BL00555___mobB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 601
# Identity: 341/601 (56.7%)
# Similarity: 341/601 (56.7%)
# Gaps: 152/601 (25.3%)
# Score: 905.5
#
#
#=======================================
BSNT_02387___ 1 ATGGCCTTGGTCCG-TCCTTTCCCGATCGTCCAAGTTGTAGGATTTCAAA 49
.||| ||| .|.|||.||.|||.||||..|.|||||.|..||||
BL00555___mob 1 ------GTGG-CCGCACATTTTCCAATCCTCCAGATCGTAGGGTACCAAA 43
BSNT_02387___ 50 ACAGCGGGAAAACAACGTTTATTGAGCGCATTCTTGAAAAA---GC---- 92
|||||||.|||||.||||| || |||||||| ||
BL00555___mob 44 ACAGCGGCAAAACGACGTT-------CG-----TTGAAAAATTGGCGGGA 81
BSNT_02387___ 93 ---CTCTGAACAG---GGAGTCCATTTGGGCTGCCTGAAGCATCATGGTC 136
||| ||.||| ||||||.||.|.|||||.|||||.||.||.||.|
BL00555___mob 82 AAGCTC-GATCAGCTAGGAGTCAATGTTGGCTGTCTGAAACACCACGGAC 130
BSNT_02387___ 137 ACGGCGGTGAACCGCAAACGC--TCACGGAAGGAAAAGACACGGACCG-- 182
|.||.||.|||||| .|||| |..|.|||||.||.||..|.|||||
BL00555___mob 131 ATGGAGGAGAACCG--GACGCTTTTGCCGAAGGGAAGGATTCCGACCGCT 178
BSNT_02387___ 183 --TTACAAGGCGGCAGGTGCTGATGTAACAGCAGTAGAAGGTGCTGGTGT 230
||.| .|||.||.||.|.||...|.|..|||||||||||.||.||
BL00555___mob 179 TTTTTC----GGGCTGGAGCGGCTGCGTCCGGCGTAGAAGGTGCGGGCGT 224
BSNT_02387___ 231 GTTACAGCTGACTGCCCGCCGCAATTGG------GAT-------TTGGC- 266
.||.|||||.||.||.|||.||.|.||| ||| |||.|
BL00555___mob 225 TTTTCAGCTTACGGCGCGCGGCGAGTGGACGCTTGATCAACTGATTGCCG 274
BSNT_02387___ 267 ---ACGGCTGATTGAGTTATACCAATTTCTCGAAACAGACTGTCTTCTGA 313
||||| |||.||.||.|| ||.|||||.||.|
BL00555___mob 275 CTTACGGC-------GTTTTAGCAGTT----------GAGTGTCTCCTCA 307
BSNT_02387___ 314 TTGAAGGCTTTAAAAAAGCCTCTTATCCTAAAGTGGTTATCCTAAGTGAA 363
|.|||||.||||||.|.||..|.||||..|||||.||.||..|.|| |
BL00555___mob 308 TCGAAGGATTTAAACATGCGCCATATCAAAAAGTTGTCATGGTCAG---A 354
BSNT_02387___ 364 AAGGAAGATCTGGAAGCGCTGCAAGC------AGTAAAT-------ATAA 400
||.|||| .||| ||||..|| ||.||.| ||.|
BL00555___mob 355 AACGAAG---CGGA----CTGCCGGCTCCTGAAGGAATTGGACGGCATCA 397
BSNT_02387___ 401 TCGCCATCATCTA-TAGAAAAAAAGAGCATATGACAGAGC----ATCAGG 445
|||||.||||.|| .|| .||||| |||| |.||
BL00555___mob 398 TCGCCGTCATTTACCAG-----CAGAGC--------GAGCCGAAAACA-- 432
BSNT_02387___ 446 GATTACCCGTT------TTTCATGCGGATGATCCGGTTGCCGTGGACTTT 489
||| ||| ||||||...||.||.||||.||||.|||..|||
BL00555___mob 433 GAT-----GTTCCATCCTTTCATATTGAAGACCCGGGTGCCCTGGCTTTT 477
BSNT_02387___ 490 GTGCTTTCACAGCTGAAGGGGGAA--------TCTG----------CATA 521
.|.||....||.||.||||.|||| |||| ||||
BL00555___mob 478 ATTCTGAATCATCTAAAGGAGGAAGGCGTTTGTCTGAACGATTTATCATA 527
BSNT_02387___ 522 A 522
|
BL00555___mob 528 A 528
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