Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02380 and BL00552

See Amino acid alignment / Visit BSNT_02380 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:55
# Commandline: needle
#    -asequence dna-align/BSNT_02380___yknT.1.5803.seq
#    -bsequence dna-align/BL00552___yknT.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02380___yknT-BL00552___yknT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02380___yknT-BL00552___yknT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02380___yknT
# 2: BL00552___yknT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1076
# Identity:     640/1076 (59.5%)
# Similarity:   640/1076 (59.5%)
# Gaps:         229/1076 (21.3%)
# Score: 1722.0
# 
#
#=======================================

BSNT_02380___      1 ATG---AAAAGATCAGGT------CCTTTTTTCCACGACGTGTCTCAGGA     41
                     |||   ||||.|||.|||      ||||.|||.||.||..|.||.|||||
BL00552___ykn      1 ATGAAAAAAACATCGGGTTCGCTGCCTTATTTTCAAGATTTATCACAGGA     50

BSNT_02380___     42 GAACCTTTATTTAAAATCCGAGCTTTCAAGGTGCCATAAGCTGATTGCT-     90
                     .|||||||.|||||||.|.|||||..||||.|..|||.|    ||||.| 
BL00552___ykn     51 AAACCTTTTTTTAAAAGCTGAGCTGGCAAGATCACATCA----ATTGATA     96

BSNT_02380___     91 ---GAACTTGAAGCAAGCTACTTTCATCAGAAAAATAACAAACTGCTCA-    136
                        ||.||||||||||||||.|||||.|||||||||.|.||   ||||| 
BL00552___ykn     97 CACGAGCTTGAAGCAAGCTATTTTCACCAGAAAAATCATAA---GCTCAG    143

BSNT_02380___    137 --AAGAAAATACCGATATGAAAGAAAAACTCCAGCAGCTGTCTGCCGAAT    184
                       ..|||||..|.|..||||||.|..|.||.|||||||||||...||||.
BL00552___ykn    144 CCGGGAAAACGCAGCAATGAAACAGCAGCTTCAGCAGCTGTCATTCGAAC    193

BSNT_02380___    185 T--AACACATAT-GTCAACAAAAGAAAAACATGCCTCCCACACCAGCC-A    230
                     |  |.|..||.| |.||| |.|||.||.|||.|         .|.||| |
BL00552___ykn    194 TGGAGCGGATTTCGGCAA-ACAAGGAAGACAAG---------TCGGCCGA    233

BSNT_02380___    231 AACCCTGCACCAAAT-AAGAGCTGAACTGCTTGA-TAAAATCGTTGTTTT    278
                     |||.||..|||..|| ||.||| |||.||| ||| |||||||||.|||.|
BL00552___ykn    234 AACGCTCAACCGGATAAAAAGC-GAATTGC-TGAGTAAAATCGTCGTTCT    281

BSNT_02380___    279 GCAGGAGCTTCTATCTGCT------GAAACCTTT------AAACGCAGAG    316
                     .|||||||||||      |      |||||||.|      |||| .||||
BL00552___ykn    282 TCAGGAGCTTCT------TCAAAAAGAAACCTATGCAAGAAAAC-AAGAG    324

BSNT_02380___    317 CCGAAATCGAAGAAAAACATAAACTTCATATTGCGAAAGTCAAAATCGAA    366
                          ||.||||||||.||....||||||.|..|.||.||.|||..||||
BL00552___ykn    325 -----ATAGAAGAAAAGCACCGCCTTCATTTAACAAATGTAAAAGCCGAA    369

BSNT_02380___    367 GAAGAAAATAAAAATCTT-CATAAACGGATCAG----CGAACTTCAAGCC    411
                     |||||.|| |||||.||| ||||..|..|| ||    ||||    ||||.
BL00552___ykn    370 GAAGAGAA-AAAAAGCTTACATAGCCAAAT-AGAATACGAA----AAGCT    413

BSNT_02380___    412 TCGATTGAGCAGGAACAAAATGCACTGCTTCAGGCAAAACAGCAAGCCGA    461
                     || ||   ||||.||.|.||...|| |||...||.||||.||.||...||
BL00552___ykn    414 TC-AT---GCAGAAAGAGAAAAAAC-GCTGAGGGAAAAAAAGGAACAGGA    458

BSNT_02380___    462 ATTGATAAAAGC------CGAAAACGGGCGTCTAAAAAAGCAA----ATG    501
                     ..|.|.|||.||      ||||||.|..||.||.|||.|..||    |||
BL00552___ykn    459 GCTCAAAAACGCTGCATACGAAAATGCCCGCCTGAAAGATGAACTTCATG    508

BSNT_02380___    502 GTAGAAAAAGAATATCAGCTAAAACATATTAAAATAGAAGTTG----ATC    547
                     .|   |||||..| ||||||.|||||.||..|||..||.||||    || 
BL00552___ykn    509 CT---AAAAGTCT-TCAGCTCAAACAAATCGAAACTGATGTTGCGGTAT-    553

BSNT_02380___    548 ATATGAAAGATCGAATCATAGAAACGAAAGAAAGACTGCT-----AGACA    592
                        |.|||||.||..|.|..|||||||   ||||.|.|||     ||.| 
BL00552___ykn    554 ---TAAAAGAGCGGGTGACGGAAACGA---AAAGCCGGCTTTTGGAGGC-    596

BSNT_02380___    593 TAGAAAAAACGAAAGAAAAATTATTTCACGAAACTATTATATCGTATAAA    642
                      .||||||||.||||||....|.|||.|.|||||.|||.|.||.||||||
BL00552___ykn    597 -TGAAAAAACAAAAGAAGCGCTGTTTTATGAAACGATTCTCTCTTATAAA    645

BSNT_02380___    643 CGGCAGCTTGATGAAAGCGATGCCTGGATTGCTTCTCATTTTGCCGATAT    692
                     .||||.||.||||||||.|||...|||||.||||||||||||||||||||
BL00552___ykn    646 AGGCAACTCGATGAAAGTGATAAGTGGATCGCTTCTCATTTTGCCGATAT    695

BSNT_02380___    693 TGATG-------GCGGCACG------------AAACAAAAAGAAAA----    719
                     |||||       ||.| |||            .|||||||.||..|    
BL00552___ykn    696 TGATGCATTTCAGCAG-ACGGAGAAGGCGCTTGAACAAAACGAGGAGGTT    744

BSNT_02380___    720 ----AACGGA-AGAAGAAGCTCCAGCGGTCTACGCGCAGCCAAATCATGT    764
                         |||||| ||||                         ||.|||    
BL00552___ykn    745 TTTGAACGGACAGAA-------------------------CAGATC----    765

BSNT_02380___    765 AGAGACTATCCTTGAAGATGTCAC----CAAACAGATACATGTGCTTCAA    810
                      |||.|..|.|||.||..|||.||    |||...||| ||   |||.|||
BL00552___ykn    766 -GAGGCGGTGCTTCAAACTGTTACAGAGCAAGTTGAT-CA---GCTCCAA    810

BSNT_02380___    811 AAACAGCTTGCCCGCGCCCAATCATCAGACCAGGCCAAGAGCCATAC---    857
                     .|||| .|||..||   |||.|||.||         ||..|  ||||   
BL00552___ykn    811 CAACA-ATTGAGCG---CCATTCAACA---------AAATG--ATACGAA    845

BSNT_02380___    858 AATCGA------------AGAGCTG--AAAAACAGAGCCGCTGAAGAAAA    893
                     |||.||            ||| .||  |||||||| ||....|||||||.
BL00552___ykn    846 AATGGATCAAAAAATAACAGA-ATGGAAAAAACAG-GCGAAAGAAGAAAC    893

BSNT_02380___    894 GCCTTATCAAAAGTGGGTGTATAAGCTTAATC---TTGAAAAAGAAAACA    940
                     .||....|||||.|||||.|||.|..||||.|   ..||.|||||||..|
BL00552___ykn    894 ACCCCCGCAAAAATGGGTCTATCAAATTAAACGCAAAGACAAAGAAACAA    943

BSNT_02380___    941 AACCTTCACAGAAAAAACCTCAATAA    966
                     ||||||.|.|..||            
BL00552___ykn    944 AACCTTTAAATTAA------------    957


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