Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02380 and BL00552
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:55
# Commandline: needle
# -asequence dna-align/BSNT_02380___yknT.1.5803.seq
# -bsequence dna-align/BL00552___yknT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02380___yknT-BL00552___yknT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02380___yknT-BL00552___yknT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02380___yknT
# 2: BL00552___yknT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1076
# Identity: 640/1076 (59.5%)
# Similarity: 640/1076 (59.5%)
# Gaps: 229/1076 (21.3%)
# Score: 1722.0
#
#
#=======================================
BSNT_02380___ 1 ATG---AAAAGATCAGGT------CCTTTTTTCCACGACGTGTCTCAGGA 41
||| ||||.|||.||| ||||.|||.||.||..|.||.|||||
BL00552___ykn 1 ATGAAAAAAACATCGGGTTCGCTGCCTTATTTTCAAGATTTATCACAGGA 50
BSNT_02380___ 42 GAACCTTTATTTAAAATCCGAGCTTTCAAGGTGCCATAAGCTGATTGCT- 90
.|||||||.|||||||.|.|||||..||||.|..|||.| ||||.|
BL00552___ykn 51 AAACCTTTTTTTAAAAGCTGAGCTGGCAAGATCACATCA----ATTGATA 96
BSNT_02380___ 91 ---GAACTTGAAGCAAGCTACTTTCATCAGAAAAATAACAAACTGCTCA- 136
||.||||||||||||||.|||||.|||||||||.|.|| |||||
BL00552___ykn 97 CACGAGCTTGAAGCAAGCTATTTTCACCAGAAAAATCATAA---GCTCAG 143
BSNT_02380___ 137 --AAGAAAATACCGATATGAAAGAAAAACTCCAGCAGCTGTCTGCCGAAT 184
..|||||..|.|..||||||.|..|.||.|||||||||||...||||.
BL00552___ykn 144 CCGGGAAAACGCAGCAATGAAACAGCAGCTTCAGCAGCTGTCATTCGAAC 193
BSNT_02380___ 185 T--AACACATAT-GTCAACAAAAGAAAAACATGCCTCCCACACCAGCC-A 230
| |.|..||.| |.||| |.|||.||.|||.| .|.||| |
BL00552___ykn 194 TGGAGCGGATTTCGGCAA-ACAAGGAAGACAAG---------TCGGCCGA 233
BSNT_02380___ 231 AACCCTGCACCAAAT-AAGAGCTGAACTGCTTGA-TAAAATCGTTGTTTT 278
|||.||..|||..|| ||.||| |||.||| ||| |||||||||.|||.|
BL00552___ykn 234 AACGCTCAACCGGATAAAAAGC-GAATTGC-TGAGTAAAATCGTCGTTCT 281
BSNT_02380___ 279 GCAGGAGCTTCTATCTGCT------GAAACCTTT------AAACGCAGAG 316
.||||||||||| | |||||||.| |||| .||||
BL00552___ykn 282 TCAGGAGCTTCT------TCAAAAAGAAACCTATGCAAGAAAAC-AAGAG 324
BSNT_02380___ 317 CCGAAATCGAAGAAAAACATAAACTTCATATTGCGAAAGTCAAAATCGAA 366
||.||||||||.||....||||||.|..|.||.||.|||..||||
BL00552___ykn 325 -----ATAGAAGAAAAGCACCGCCTTCATTTAACAAATGTAAAAGCCGAA 369
BSNT_02380___ 367 GAAGAAAATAAAAATCTT-CATAAACGGATCAG----CGAACTTCAAGCC 411
|||||.|| |||||.||| ||||..|..|| || |||| ||||.
BL00552___ykn 370 GAAGAGAA-AAAAAGCTTACATAGCCAAAT-AGAATACGAA----AAGCT 413
BSNT_02380___ 412 TCGATTGAGCAGGAACAAAATGCACTGCTTCAGGCAAAACAGCAAGCCGA 461
|| || ||||.||.|.||...|| |||...||.||||.||.||...||
BL00552___ykn 414 TC-AT---GCAGAAAGAGAAAAAAC-GCTGAGGGAAAAAAAGGAACAGGA 458
BSNT_02380___ 462 ATTGATAAAAGC------CGAAAACGGGCGTCTAAAAAAGCAA----ATG 501
..|.|.|||.|| ||||||.|..||.||.|||.|..|| |||
BL00552___ykn 459 GCTCAAAAACGCTGCATACGAAAATGCCCGCCTGAAAGATGAACTTCATG 508
BSNT_02380___ 502 GTAGAAAAAGAATATCAGCTAAAACATATTAAAATAGAAGTTG----ATC 547
.| |||||..| ||||||.|||||.||..|||..||.|||| ||
BL00552___ykn 509 CT---AAAAGTCT-TCAGCTCAAACAAATCGAAACTGATGTTGCGGTAT- 553
BSNT_02380___ 548 ATATGAAAGATCGAATCATAGAAACGAAAGAAAGACTGCT-----AGACA 592
|.|||||.||..|.|..||||||| ||||.|.||| ||.|
BL00552___ykn 554 ---TAAAAGAGCGGGTGACGGAAACGA---AAAGCCGGCTTTTGGAGGC- 596
BSNT_02380___ 593 TAGAAAAAACGAAAGAAAAATTATTTCACGAAACTATTATATCGTATAAA 642
.||||||||.||||||....|.|||.|.|||||.|||.|.||.||||||
BL00552___ykn 597 -TGAAAAAACAAAAGAAGCGCTGTTTTATGAAACGATTCTCTCTTATAAA 645
BSNT_02380___ 643 CGGCAGCTTGATGAAAGCGATGCCTGGATTGCTTCTCATTTTGCCGATAT 692
.||||.||.||||||||.|||...|||||.||||||||||||||||||||
BL00552___ykn 646 AGGCAACTCGATGAAAGTGATAAGTGGATCGCTTCTCATTTTGCCGATAT 695
BSNT_02380___ 693 TGATG-------GCGGCACG------------AAACAAAAAGAAAA---- 719
||||| ||.| ||| .|||||||.||..|
BL00552___ykn 696 TGATGCATTTCAGCAG-ACGGAGAAGGCGCTTGAACAAAACGAGGAGGTT 744
BSNT_02380___ 720 ----AACGGA-AGAAGAAGCTCCAGCGGTCTACGCGCAGCCAAATCATGT 764
|||||| |||| ||.|||
BL00552___ykn 745 TTTGAACGGACAGAA-------------------------CAGATC---- 765
BSNT_02380___ 765 AGAGACTATCCTTGAAGATGTCAC----CAAACAGATACATGTGCTTCAA 810
|||.|..|.|||.||..|||.|| |||...||| || |||.|||
BL00552___ykn 766 -GAGGCGGTGCTTCAAACTGTTACAGAGCAAGTTGAT-CA---GCTCCAA 810
BSNT_02380___ 811 AAACAGCTTGCCCGCGCCCAATCATCAGACCAGGCCAAGAGCCATAC--- 857
.|||| .|||..|| |||.|||.|| ||..| ||||
BL00552___ykn 811 CAACA-ATTGAGCG---CCATTCAACA---------AAATG--ATACGAA 845
BSNT_02380___ 858 AATCGA------------AGAGCTG--AAAAACAGAGCCGCTGAAGAAAA 893
|||.|| ||| .|| |||||||| ||....|||||||.
BL00552___ykn 846 AATGGATCAAAAAATAACAGA-ATGGAAAAAACAG-GCGAAAGAAGAAAC 893
BSNT_02380___ 894 GCCTTATCAAAAGTGGGTGTATAAGCTTAATC---TTGAAAAAGAAAACA 940
.||....|||||.|||||.|||.|..||||.| ..||.|||||||..|
BL00552___ykn 894 ACCCCCGCAAAAATGGGTCTATCAAATTAAACGCAAAGACAAAGAAACAA 943
BSNT_02380___ 941 AACCTTCACAGAAAAAACCTCAATAA 966
||||||.|.|..||
BL00552___ykn 944 AACCTTTAAATTAA------------ 957
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