Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06136 and BL00549
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:07
# Commandline: needle
# -asequence dna-align/BSNT_06136___yxaD.1.5803.seq
# -bsequence dna-align/BL00549___yxaD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06136___yxaD-BL00549___yxaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06136___yxaD-BL00549___yxaD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06136___yxaD
# 2: BL00549___yxaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 530
# Identity: 244/530 (46.0%)
# Similarity: 244/530 (46.0%)
# Gaps: 199/530 (37.5%)
# Score: 446.5
#
#
#=======================================
BSNT_06136___ 1 TTGCAAAATCAAAATCCAGTTGAATTAATTGAAT-ATGAGCTGACGACTT 49
|||..| |||| ||.||
BL00549___yxa 1 ----------------------------TTGGGTCATGA-CTCAC----- 16
BSNT_06136___ 50 TTATCAGGAGAGCTGTTTATCTGGATCAATCAGAGAAAAGAACAGGGAAT 99
||.|.|.|| .|||||||..||..|.|..|
BL00549___yxa 17 -------------------TCCGAAACA--TAGAGAAAGAAATCGCGCTT 45
BSNT_06136___ 100 TTGGAGAGATCTTCGTACTTATTACTGA-GAC---------------AAT 133
|||| |.||| |||| ||| ..|
BL00549___yxa 46 TTGG-------TCCGT--------CTGACGACGGCCTACAGCCCGCGCTT 80
BSNT_06136___ 134 TGGATGAGTTTGGGCCTGCTCG----------TGTTAAG-GA-----ATT 167
|||| |||.|||.|| ||||| ||||||| || ||.
BL00549___yxa 81 TGGA--AGTCTGGACC-GCTCGGAATATCTGCTGTTAAGCGAGCTTGATA 127
BSNT_06136___ 168 GGCAGAATCGT-------TTAA---GCT---TGA-----TATTTCT-ACT 198
.|||.|.||.| |.|| ||| ||| ||.|.|| |.|
BL00549___yxa 128 AGCAAAGTCCTCTCGCCATCAACTCGCTGGCTGAAACCTTAATGCTGAAT 177
BSNT_06136___ 199 CTTTCAAGA-CAAGCAG--------CTGCATTAGA--GGCAAAGGAGCTC 237
||.||.|.| ||||||| |.||.||.|| ||.||| |||||
BL00549___yxa 178 CTGTCGACAGCAAGCAGACAAGTTTCAGCCTTGGAACGGAAAA--AGCTC 225
BSNT_06136___ 238 ATCTATCGTTTCTCAGA-CCCATCTGATGGGAGAGTCAGCCT------GT 280
|||...|||||..|.|| ||||.| .|.||..|..||||||| |.
BL00549___yxa 226 ATCAGACGTTTTCCTGATCCCAAC-AACGGCCGGATCAGCCTTGTGGAGA 274
BSNT_06136___ 281 TTAC---------CATTACAAAACTCGGCAAACAACTATTAAAAGCCGAT 321
|.|| |||| .|..|||.|.| |||||
BL00549___yxa 275 TGACTTCGGAGGGCATT--GATGCTCTGAA----------AAAAG----- 307
BSNT_06136___ 322 CAGCAAAAGCGCCTTGAACGTTATGA-------AC--AGATGCTGAAAGA 362
.||||||| ||| ||.|||.| || ||.|.||..||||
BL00549___yxa 308 -TGCAAAAG-GCC-----CGCTATCATGTATACACGGAGGTTCTTCAAGA 350
BSNT_06136___ 363 ATGGTCAACACAGGAAAAAGAGATGTTCGGCGAGCTGCTGCAGC-GTATG 411
.|||.|||||.|.|||....|.|.||| ||..|.|.|||..|.| |..||
BL00549___yxa 351 CTGGACAACAGAAGAACTGAACACGTT-GGAAACCCGCTTGATCAGACTG 399
BSNT_06136___ 412 AACAAGGCTTTTA-----TCGATTAA---- 432
||..|||.||||| |.||..||
BL00549___yxa 400 AATCAGGATTTTAAAAAGTGGAGCAAATAA 429
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