Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02007 and BL00545

See Amino acid alignment / Visit BSNT_02007 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:31
# Commandline: needle
#    -asequence dna-align/BSNT_02007.1.5803.seq
#    -bsequence dna-align/BL00545.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02007-BL00545.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02007-BL00545.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02007
# 2: BL00545
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 831
# Identity:     207/831 (24.9%)
# Similarity:   207/831 (24.9%)
# Gaps:         579/831 (69.7%)
# Score: 674.5
# 
#
#=======================================

BSNT_02007         1 ATGCATTACTTAGCGGAACACCAAACGTTCGACTCGACGGATCAACTTAA     50
                     ||||||||.||||||||||||||||||||||..|||||||...||||.||
BL00545            1 ATGCATTATTTAGCGGAACACCAAACGTTCGCTTCGACGGCCGAACTCAA     50

BSNT_02007        51 CGAATCTGTTTACGAACATATCAAACGCAATACATACGAGCTTAACGATA    100
                     ||...|.||.||||||||.|||||.||||||||||||||..|.||.||.|
BL00545           51 CGCGGCAGTCTACGAACACATCAAGCGCAATACATACGAATTAAATGACA    100

BSNT_02007       101 CGGATCGCCGGGCGCTGAA---------------------TAAATT----    125
                     ||||.||.|.|.|||||||                     .|||||    
BL00545          101 CGGACCGGCTGACGCTGAAGACGATTGCTCGTTACGCAGTCAAATTCGCC    150

BSNT_02007       126 -----------------AGCGGGG---CTCG-------------------    136
                                      |||||.|   ||||                   
BL00545          151 GGCGCAGCGCATCTCAAAGCGGAGACACTCGCGGACCTGATCGGAAAGTC    200

BSNT_02007       137 ------------GCATCGT----------AA-------------------    145
                                 ||.||||          ||                   
BL00545          201 CGTCAAGACAGCGCGTCGTGCCGTCAACAAACTCGCATCACTTTCGATCA    250

BSNT_02007       146 ---AGAAGGTTGCTACTACGCGGAAGATTAACGGAGGAAAAGGCGCGAAC    192
                        |||||||.||.||.||.|||||.||.|||||.||..|.|||||.||.
BL00545          251 TCCAGAAGGTCGCGACAACACGGAAAATAAACGGCGGCCACGGCGCCAAT    300

BSNT_02007       193 ATCATCGTGATCCTGCCGGTTAATAACGCTAGTGAAG-------------    229
                     ||||||||.||.||.|||||      ||     ||||             
BL00545          301 ATCATCGTCATTCTTCCGGT------CG-----GAAGCAGAGTCGAGGAC    339

BSNT_02007       230 ----------CCGAGGATGACCAATCGACAATGTCCA---------ATCG    260
                               ||||.||||||||.|||||||||.|||         || |
BL00545          340 ATGCAATTGTCCGAAGATGACCAGTCGACAATGACCACGCGTGGGGAT-G    388

BSNT_02007       261 CTGA----------------------------------------------    264
                     |.||                                              
BL00545          389 CCGAAAAGCCATCAGAGCCAACGGATGAATCGCCTAAAACTACGAATGAA    438

BSNT_02007       264 --------------------------------------------------    264
                                                                       
BL00545          439 CCATCGGATTCTATAAATCTTTCAAAAAATCACGTAATAGATACGGTGCC    488

BSNT_02007       264 --------------------------------------------------    264
                                                                       
BL00545          489 GGCCTGCGGTCTTAAAAATGCGTTACCAAGCGAAATCTACTCCGCAATGG    538

BSNT_02007       264 --------------------------------------------------    264
                                                                       
BL00545          539 CGCGCTACTTCGAAGCAGACGAAATTTATAAATACTACGGAATCTTATTG    588

BSNT_02007       264 --------------------------------------------------    264
                                                                       
BL00545          589 CGGGCTAAGGCAAGCGTAGATCCAACGCTGATACTCGAAGAACATCCGCA    638

BSNT_02007       264 --------------------------------------------------    264
                                                                       
BL00545          639 GCCATTCGTTGAAGCGTGGCATGCAGCGATTCTGAAACGAAAACAGCAGA    688

BSNT_02007       264 --------------------------------------------------    264
                                                                       
BL00545          689 AAATTAGACGCTTTGACGACTACCTATACGCTAGCTTCCGACAAGCCGCA    738

BSNT_02007       264 --------------------------------------------------    264
                                                                       
BL00545          739 TGGACAGTAAAAGCCCGTGAAAATCGCGTTAAAAACGTTGGGCTATTGGC    788

BSNT_02007       264 -------------------------------    264
                                                    
BL00545          789 GGAGTTCGAAACGTTCCTCCAAGCGGAATAG    819


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