Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02007 and BL00545
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:31
# Commandline: needle
# -asequence dna-align/BSNT_02007.1.5803.seq
# -bsequence dna-align/BL00545.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02007-BL00545.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02007-BL00545.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02007
# 2: BL00545
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 831
# Identity: 207/831 (24.9%)
# Similarity: 207/831 (24.9%)
# Gaps: 579/831 (69.7%)
# Score: 674.5
#
#
#=======================================
BSNT_02007 1 ATGCATTACTTAGCGGAACACCAAACGTTCGACTCGACGGATCAACTTAA 50
||||||||.||||||||||||||||||||||..|||||||...||||.||
BL00545 1 ATGCATTATTTAGCGGAACACCAAACGTTCGCTTCGACGGCCGAACTCAA 50
BSNT_02007 51 CGAATCTGTTTACGAACATATCAAACGCAATACATACGAGCTTAACGATA 100
||...|.||.||||||||.|||||.||||||||||||||..|.||.||.|
BL00545 51 CGCGGCAGTCTACGAACACATCAAGCGCAATACATACGAATTAAATGACA 100
BSNT_02007 101 CGGATCGCCGGGCGCTGAA---------------------TAAATT---- 125
||||.||.|.|.||||||| .|||||
BL00545 101 CGGACCGGCTGACGCTGAAGACGATTGCTCGTTACGCAGTCAAATTCGCC 150
BSNT_02007 126 -----------------AGCGGGG---CTCG------------------- 136
|||||.| ||||
BL00545 151 GGCGCAGCGCATCTCAAAGCGGAGACACTCGCGGACCTGATCGGAAAGTC 200
BSNT_02007 137 ------------GCATCGT----------AA------------------- 145
||.|||| ||
BL00545 201 CGTCAAGACAGCGCGTCGTGCCGTCAACAAACTCGCATCACTTTCGATCA 250
BSNT_02007 146 ---AGAAGGTTGCTACTACGCGGAAGATTAACGGAGGAAAAGGCGCGAAC 192
|||||||.||.||.||.|||||.||.|||||.||..|.|||||.||.
BL00545 251 TCCAGAAGGTCGCGACAACACGGAAAATAAACGGCGGCCACGGCGCCAAT 300
BSNT_02007 193 ATCATCGTGATCCTGCCGGTTAATAACGCTAGTGAAG------------- 229
||||||||.||.||.||||| || ||||
BL00545 301 ATCATCGTCATTCTTCCGGT------CG-----GAAGCAGAGTCGAGGAC 339
BSNT_02007 230 ----------CCGAGGATGACCAATCGACAATGTCCA---------ATCG 260
||||.||||||||.|||||||||.||| || |
BL00545 340 ATGCAATTGTCCGAAGATGACCAGTCGACAATGACCACGCGTGGGGAT-G 388
BSNT_02007 261 CTGA---------------------------------------------- 264
|.||
BL00545 389 CCGAAAAGCCATCAGAGCCAACGGATGAATCGCCTAAAACTACGAATGAA 438
BSNT_02007 264 -------------------------------------------------- 264
BL00545 439 CCATCGGATTCTATAAATCTTTCAAAAAATCACGTAATAGATACGGTGCC 488
BSNT_02007 264 -------------------------------------------------- 264
BL00545 489 GGCCTGCGGTCTTAAAAATGCGTTACCAAGCGAAATCTACTCCGCAATGG 538
BSNT_02007 264 -------------------------------------------------- 264
BL00545 539 CGCGCTACTTCGAAGCAGACGAAATTTATAAATACTACGGAATCTTATTG 588
BSNT_02007 264 -------------------------------------------------- 264
BL00545 589 CGGGCTAAGGCAAGCGTAGATCCAACGCTGATACTCGAAGAACATCCGCA 638
BSNT_02007 264 -------------------------------------------------- 264
BL00545 639 GCCATTCGTTGAAGCGTGGCATGCAGCGATTCTGAAACGAAAACAGCAGA 688
BSNT_02007 264 -------------------------------------------------- 264
BL00545 689 AAATTAGACGCTTTGACGACTACCTATACGCTAGCTTCCGACAAGCCGCA 738
BSNT_02007 264 -------------------------------------------------- 264
BL00545 739 TGGACAGTAAAAGCCCGTGAAAATCGCGTTAAAAACGTTGGGCTATTGGC 788
BSNT_02007 264 ------------------------------- 264
BL00545 789 GGAGTTCGAAACGTTCCTCCAAGCGGAATAG 819
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