Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05221 and BL00542

See Amino acid alignment / Visit BSNT_05221 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:21
# Commandline: needle
#    -asequence dna-align/BSNT_05221.1.5803.seq
#    -bsequence dna-align/BL00542___xlyB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05221-BL00542___xlyB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05221-BL00542___xlyB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05221
# 2: BL00542___xlyB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 956
# Identity:     713/956 (74.6%)
# Similarity:   713/956 (74.6%)
# Gaps:          94/956 ( 9.8%)
# Score: 2869.5
# 
#
#=======================================

BSNT_05221         0 --------------------------------------------------      0
                                                                       
BL00542___xly      1 ATGGCGATTTCAGTCAAGAAAAACCTCGTCGCGTCAAGTAAGTATTCCGT     50

BSNT_05221         1 ----------------ATGGATGCGAAATACATTACGTTCCACAATACGG     34
                                     |||||||||||.|||||.|||||.||||||||||
BL00542___xly     51 TAAGTGTCCGTATTCAATGGATGCGAAGTACATCACGTTTCACAATACGG    100

BSNT_05221        35 CGAACGACGCATCAGCGGACGCA-GAGATTCGGTATATGATCGGAAACAA     83
                     ||||||||||.|||||.| ||.| ||.|||..|||.||||||.|.||.||
BL00542___xly    101 CGAACGACGCTTCAGCAG-CGAATGAAATTGCGTACATGATCCGCAATAA    149

BSNT_05221        84 CAACGAAGTATCTTACCATTTCGCGGTGGACGATAAGGAAGTCGTTCAAG    133
                     ||||.|||||||.||.||.||.|||||.||||||||.||.||||||||.|
BL00542___xly    150 CAACCAAGTATCGTATCACTTTGCGGTAGACGATAAAGAGGTCGTTCAGG    199

BSNT_05221       134 GAATTCCGACGGATCGTAACGCGTGGCATACCGGAGACGGTAGCGGATCA    183
                     |.||||||||..|.||||||||.||||||..||||||||..|.||||   
BL00542___xly    200 GGATTCCGACAAACCGTAACGCATGGCATTGCGGAGACGAAAACGGA---    246

BSNT_05221       184 AATTCCGGAAACCGTACGTCTATCGGCGTAGAGGTTTGTTATTCGAAATC    233
                        .||||.||||||.|.|||||||||||.||||||||.|||||||||||
BL00542___xly    247 ---CCCGGCAACCGTTCATCTATCGGCGTCGAGGTTTGCTATTCGAAATC    293

BSNT_05221       234 AGGAGGCGCTAAGTACAAAGCGGCCGAAAAGCTGGCGATTAAGTTTATTG    283
                     |||.|||||||||||.||||||||||||||.||.||||||||.||.||.|
BL00542___xly    294 AGGCGGCGCTAAGTATAAAGCGGCCGAAAAACTTGCGATTAAATTCATCG    343

BSNT_05221       284 CGCAACTGTTAAAAGAGCGCGGCTGGGGCGTTGATCGTGTCCGAAAGCAC    333
                     |.||.||.||||.||||||||||||||||||||||||.||....|||||.
BL00542___xly    344 CTCAGCTATTAACAGAGCGCGGCTGGGGCGTTGATCGCGTTAAGAAGCAT    393

BSNT_05221       334 CAGGATTGGTCCGGCAAATATTGTCCGCATCGCGTGCTCGCTGAAGGACG    383
                     |||||||||..|||.|||||.||.|||||.||.||.||||.|||.||.||
BL00542___xly    394 CAGGATTGGAGCGGAAAATACTGCCCGCACCGTGTACTCGATGAGGGGCG    443

BSNT_05221       384 TTGGGAATCTGTAAAGGCGGCAATCGCGGCGGAACTTAAAGCGCTCGGCG    433
                     |||||...|.|||||.|||||.|||||.||||||.|.|||||||||||.|
BL00542___xly    444 TTGGGGTGCGGTAAAAGCGGCCATCGCTGCGGAATTGAAAGCGCTCGGAG    493

BSNT_05221       434 GAAAATCAACGTCATCTTCATCC--GCGAAGAAATCAGCGCCAAAAGCTT    481
                     ||||      |||.|||  |.||  ||   |||||||||.||.|||||.|
BL00542___xly    494 GAAA------GTCGTCT--AGCCCTGC---GAAATCAGCACCGAAAGCAT    532

BSNT_05221       482 CCGGGTCTACTTATACCGTCAAGAAAGGCGACACACTTTCCGAAATAGCG    531
                     ||||....||.||||||||.||||||||||||||.|||||.|||||.|||
BL00542___xly    533 CCGGTAAGACGTATACCGTAAAGAAAGGCGACACGCTTTCGGAAATCGCG    582

BSNT_05221       532 GAGAAAACAGGCGTAAGTGTAACGAAGCTTCAATCGTACAACGGCATCAA    581
                     |..|||||||||||.|||||..||||.||.||.||.||.|||||.||.||
BL00542___xly    583 GTTAAAACAGGCGTTAGTGTGGCGAAACTCCAGTCCTATAACGGTATTAA    632

BSNT_05221       582 GAACGCGAATAAAATTACGGTCGGCCAGGTGCTCAAACTTAAAGGCGGAT    631
                     .||..||||||||||.|.||||||.||||||||.||.||||..|||  |.
BL00542___xly    633 AAATCCGAATAAAATCATGGTCGGTCAGGTGCTGAAGCTTACGGGC--AG    680

BSNT_05221       632 CG-----TCTAAGCCGTCGTCCGGCGGTAAGAAATACGTCTACCTTCCGG    676
                     ||     ||.||.|||||.||..||||||||||||||||.||.|||||||
BL00542___xly    681 CGTTAGTTCCAAACCGTCCTCTAGCGGTAAGAAATACGTATATCTTCCGG    730

BSNT_05221       677 CTTCGGCCGATTCTTGGCGTATCTATCCGACTAACAAAGCGCCGGTTAAA    726
                     |.||.|||||.||.|||||.||||||||||||||||||||||||||.||.
BL00542___xly    731 CATCTGCCGACTCATGGCGCATCTATCCGACTAACAAAGCGCCGGTCAAG    780

BSNT_05221       727 GGAAATGAATGCGGCTACTTGCGCCCTCAGAAATTTGGCGGTCTGAAGTA    776
                     ||.||.||.|||||.|...||||.||..|||||||||||||.||.||.||
BL00542___xly    781 GGGAACGAGTGCGGATTTCTGCGTCCGAAGAAATTTGGCGGCCTTAAATA    830

BSNT_05221       777 CGAAGTCCTTGCGAACCCACAAACGGACGTCTATACGATCAAAACGGATC    826
                     ||||.||||||||||.||.|||||||||||||||||||||||||||||||
BL00542___xly    831 CGAAATCCTTGCGAATCCCCAAACGGACGTCTATACGATCAAAACGGATC    880

BSNT_05221       827 AGTTCGGAAAAGTAAATATCTATGCTGCGAAATCAACCGGCGCAACAATA    876
                     |||||||||||||.||||||||.||.||||||||||||||||||||.||.
BL00542___xly    881 AGTTCGGAAAAGTGAATATCTACGCGGCGAAATCAACCGGCGCAACTATT    930

BSNT_05221       877 AAATAA    882
                     ||.|||
BL00542___xly    931 AAGTAA    936


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