Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00066 and BL00538
See
Amino acid alignment /
Visit
BSNT_00066 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:43
# Commandline: needle
# -asequence dna-align/BSNT_00066___yabA.1.5803.seq
# -bsequence dna-align/BL00538___yabA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00066___yabA-BL00538___yabA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00066___yabA-BL00538___yabA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00066___yabA
# 2: BL00538___yabA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 367
# Identity: 289/367 (78.7%)
# Similarity: 289/367 (78.7%)
# Gaps: 11/367 ( 3.0%)
# Score: 1114.5
#
#
#=======================================
BSNT_00066___ 1 TTGGATAAAAAAGAGTTATTTGATACAGTCATTAACTTAGAAGAACAAAT 50
||||||||||||||.||.|||||||||||.||.|..||||||||||||||
BL00538___yab 1 TTGGATAAAAAAGAATTGTTTGATACAGTGATAAGTTTAGAAGAACAAAT 50
BSNT_00066___ 51 TGGCTCACTGTACCGGCAGCTGGGGGATTTGAAGCAGCATATCGGTGAGA 100
.||.||.||.|||||.|||||.||.|||.|.||||||||||||||.||.|
BL00538___yab 51 CGGGTCCCTTTACCGCCAGCTTGGAGATCTCAAGCAGCATATCGGGGAAA 100
BSNT_00066___ 101 TGATTGAGGAAAATCATCATTTACAGCTTGAAAACAAGCATTTGCGCAAA 150
|||||||.|||||..||||||||||||||||||||.|||||||||||||.
BL00538___yab 101 TGATTGAAGAAAACAATCATTTACAGCTTGAAAACGAGCATTTGCGCAAG 150
BSNT_00066___ 151 CGGCTGGACGATACGACGCAGC--AGATTGAAAAG-TTCAAAGCTGATAA 197
.|||||||.|| ||||.|.| ||..|.||||| .|.|||.|.|||.|
BL00538___yab 151 AGGCTGGAAGA---GACGGATCAAAGGCTAAAAAGCGTAAAATCCGATGA 197
BSNT_00066___ 198 AAAAGA-ATCAAAAACACAGAAGACGGAGCAAACTGATATAGGGGAAGGA 246
|||||| || ||||.||.|.|||||.|.|||..|||||||.||.||.||.
BL00538___yab 198 AAAAGAGAT-AAAAGCAGAAAAGACAGGGCATGCTGATATTGGAGAGGGC 246
BSNT_00066___ 247 TATGATAATCTGGCACGTCTGTATCAAGAAGGATTTCATATCTGCAATGT 296
.||||||||.||||.||.||||||||.||.||.||.|||||.|||||..|
BL00538___yab 247 CATGATAATTTGGCTCGCCTGTATCAGGAGGGCTTCCATATTTGCAACAT 296
BSNT_00066___ 297 CCACTATGGAAGTGTTCGAAAAGA---GGATTGTCTTTTCTGTCTGTCAT 343
|||.||.|||||||||||.||||| .||.|||||.|||||.||.||.|
BL00538___yab 297 CCATTACGGAAGTGTTCGCAAAGAAGGAGACTGTCTGTTCTGCCTCTCGT 346
BSNT_00066___ 344 TCTTAAATAAAAAATAG 360
|.||||||||||||||.
BL00538___yab 347 TTTTAAATAAAAAATAA 363
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.