Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00087 and BL00520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:45
# Commandline: needle
# -asequence dna-align/BSNT_00087___gcaD.1.5803.seq
# -bsequence dna-align/BL00520___gcaD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00087___gcaD-BL00520___gcaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00087___gcaD-BL00520___gcaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00087___gcaD
# 2: BL00520___gcaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1393
# Identity: 1043/1393 (74.9%)
# Similarity: 1043/1393 (74.9%)
# Gaps: 44/1393 ( 3.2%)
# Score: 3779.0
#
#
#=======================================
BSNT_00087___ 1 ATGGATAAGCGGTTTGCAGTTGTTTTAGCGGCTGGACAAGGAACGAGAAT 50
|||||||||||||||||||||||.|||||.|||||.||||||||.|||||
BL00520___gca 1 ATGGATAAGCGGTTTGCAGTTGTGTTAGCAGCTGGTCAAGGAACAAGAAT 50
BSNT_00087___ 51 GAAATCGAAGCTTTATAAAGTCCTTCATCCAGTTTGCGGTAAGCCTATGG 100
||||||.|||||.||||||||.||||||||.||||||||.||.|||||||
BL00520___gca 51 GAAATCAAAGCTATATAAAGTTCTTCATCCTGTTTGCGGAAAACCTATGG 100
BSNT_00087___ 101 TAGAGCACGTCGTGGACGAAGCCTTAAAATTATCTTTATCGAAGCTTGTC 150
|.|||||.||.||.||.|||||....||..||||.|||...||.||||||
BL00520___gca 101 TCGAGCATGTTGTCGATGAAGCTCGCAAGCTATCATTAGAAAAACTTGTC 150
BSNT_00087___ 151 ACGATTGTCGGACATGGTGCGGAAGAAGTGAAAAAGCAGCTTGGTGATAA 200
||.||.||.|||||||||||||||||.||.|||||.|||||.||.||.||
BL00520___gca 151 ACAATAGTTGGACATGGTGCGGAAGATGTCAAAAAACAGCTCGGGGAAAA 200
BSNT_00087___ 201 AAGCGAGTACGCGCTTCAAGCAGAACAGCTTGGCACTGCTCATGCTGTAA 250
||||||.||.||.||.||.||.||||||||.|||||.||.|||||.||.|
BL00520___gca 201 AAGCGAATATGCCCTGCAGGCTGAACAGCTCGGCACGGCCCATGCCGTCA 250
BSNT_00087___ 251 AACAGGCACAGCCATTTCTTGCTGA--CGAAAAAGGCGTCACAATTGTCA 298
|.|||||..||.|..|||||| || |||||||||....|||||.||||
BL00520___gca 251 AGCAGGCCAAGTCGATTCTTG--GAAGCGAAAAAGGAACAACAATCGTCA 298
BSNT_00087___ 299 TTTGCGGAGATACGCCGCTTTTGACAGCAGAGACGATGGAACAGATGCTG 348
|.|||||||||||.||||||||.||.||.||.|||||||||...|||||.
BL00520___gca 299 TCTGCGGAGATACCCCGCTTTTAACTGCCGAAACGATGGAAGCCATGCTC 348
BSNT_00087___ 349 AAAGAACATGCA-CAAAGAGAAGCGAAAGCT-ACGATTTTAACTGCGGTT 396
|..||.||| || .|||.||.||| ||||.| |||||||||||.||.||.
BL00520___gca 349 ACGGAGCAT-CAGAAAAAAGCAGC-AAAGGTGACGATTTTAACCGCTGTA 396
BSNT_00087___ 397 GCAGAAGATCCAACTGGATACGGCCGCATTATTCGCAGCGAAAACGGAGC 446
||.||||||||.||.||.|||||.|||||||||||||..||||||||.|.
BL00520___gca 397 GCGGAAGATCCGACAGGCTACGGACGCATTATTCGCAATGAAAACGGCGA 446
BSNT_00087___ 447 GGTTCAAAAAATCGTTGAGCATAAGGACGCCTCTGAAGAAGAACGTCTTG 496
.|||..|||.||.||.||.||.||.||.||..|.|||||.|||.|.||||
BL00520___gca 447 TGTTGCAAAGATTGTCGAACACAAAGATGCAACAGAAGAGGAAAGGCTTG 496
BSNT_00087___ 497 TAACTGAGATCAACACCGGTACGTATTGTTTTGACAATGAAGCGCTATTT 546
|.|..||.||||||||.||.||.||.|||||||||||.|||||.||.|||
BL00520___gca 497 TCAAAGAAATCAACACAGGCACCTACTGTTTTGACAACGAAGCTCTTTTT 546
BSNT_00087___ 547 CGGGCTATTGATCAGGTGTCTAATGATAATGCCCAAGGCGAGTATTATTT 596
|...|.||.||.|||||.||.|||||.||.|..||.||.||.||||||.|
BL00520___gca 547 CAAACGATCGAGCAGGTTTCCAATGACAACGTACAGGGGGAATATTATCT 596
BSNT_00087___ 597 GCCGGATGTCATAGAGATTCTT-AAAAATGAAGGCGAAACTGTTGCCGCT 645
.|||||||||||.|||| |||| ||||||.||||.||||||||.||||||
BL00520___gca 597 TCCGGATGTCATTGAGA-TCTTGAAAAATCAAGGTGAAACTGTAGCCGCT 645
BSNT_00087___ 646 TACCAGACTGGTAATTTCCAAGAAACGCTCGGAGTTAATGATAGAGTTGC 695
||.|||||||..||.|||||.||||||||||||||.|||||.|||||.||
BL00520___gca 646 TATCAGACTGTCAACTTCCAGGAAACGCTCGGAGTCAATGACAGAGTCGC 695
BSNT_00087___ 696 TCTTTCTCAGGCAGAACAATTTATGAAAGAGCGCATTAATAAACGGCATA 745
.||.||.||.||.|||...|.||||||..||||.||.||||||||.||.|
BL00520___gca 696 CCTATCACAAGCGGAAATCTATATGAAGCAGCGGATCAATAAACGCCACA 745
BSNT_00087___ 746 TGCAAAATGGCGTGACGTTGATCGA-CCCGATGAATACGTATATTTCTCC 794
||||.||.|||||.|..||.||||| ||||| .||.||.||.|||||.||
BL00520___gca 746 TGCAGAACGGCGTCAGCTTAATCGATCCCGA-CAACACATACATTTCACC 794
BSNT_00087___ 795 TGACGCTGTTATCGGAAGCGATACTGTGATTTACCCTGGAACTGTGATTA 844
.||.||.||.|||||.||.|||||.||||||||.||.||.||.||.||||
BL00520___gca 795 GGAAGCCGTGATCGGCAGGGATACCGTGATTTATCCCGGCACCGTCATTA 844
BSNT_00087___ 845 AAGGTGAGGTGCAAATCGGAGAAGATACGATTATTGGCCCTCATACGGAG 894
||||...|||....|||||.|||||..||.|.||.||.| ||
BL00520___gca 845 AAGGGCGGGTTGTTATCGGTGAAGACGCGGTCATCGGAC---------AG 885
BSNT_00087___ 895 ATTA------TG---AATAGTGCCATTGGCAGCCGTACGGTTATTAAACA 935
|..| || ||.|||.|..|.||||||.|.|||||.|||||.||
BL00520___gca 886 AACAGCGAACTGGAAAACAGTACGGTCGGCAGCAGAACGGTCATTAAGCA 935
BSNT_00087___ 936 ATCGGTAGTCAATC----ACAGTAAAGTGGGGAATGATGTAAACATAGGA 981
.||.|| .||| |||||.||||.||..|.|||||.|..||.|||
BL00520___gca 936 GTCCGT----TATCGTGGACAGTGAAGTCGGCGACGATGTTACAATCGGA 981
BSNT_00087___ 982 CCTTTTGCTCACATCAGACCTGATTCTGTCATCGGGAATGAAGTGAAGAT 1031
||.||||||||.|||||.||.||.||....|||||.|||||.||.|.|||
BL00520___gca 982 CCGTTTGCTCATATCAGGCCCGACTCAAAGATCGGCAATGAGGTAAGGAT 1031
BSNT_00087___ 1032 CGGGAATTTTGTAGAAATTAAAAAGACTCAATTCGGAGACCGAAGCAAGG 1081
|||||||||.||.|||.|.|||||..|..||||.||.||.||.|||||.|
BL00520___gca 1032 CGGGAATTTCGTCGAAGTGAAAAAATCGGAATTTGGTGATCGCAGCAAAG 1081
BSNT_00087___ 1082 CATCTCATCTAAGCTATGTCGGCGATGCTGAGGTAGGCACTGATGTAAAC 1131
||||||||.|||||||..|.||.||.||.||..|.||.||.|||||.||.
BL00520___gca 1082 CATCTCATTTAAGCTACATAGGGGACGCGGAAATCGGAACGGATGTCAAT 1131
BSNT_00087___ 1132 CTGGGCTGCGGTTCAATTACTGTCAATTATGATGGAAAGAATAAGTATTT 1181
||.||||||||.||.|||||.||.|||||||||||.||..||||||.|..
BL00520___gca 1132 CTCGGCTGCGGGTCGATTACCGTAAATTATGATGGGAAACATAAGTTTAA 1181
BSNT_00087___ 1182 GACAAAAATTGAAGATGGCGCGTTTATCGGCTGTAATTCCAACTTGGTTG 1231
.||.|||||||||.||||.||.|||||||||||.||.|||||.|||||.|
BL00520___gca 1182 AACGAAAATTGAAAATGGGGCATTTATCGGCTGCAACTCCAATTTGGTCG 1231
BSNT_00087___ 1232 CCCCTGTCACAGTCGGAGAAGGCGCTTATGTGGCGGCAGGTTCAACTGTT 1281
|.||.||.|||.||||.||||||||.||.||.||.||.||||||||..||
BL00520___gca 1232 CTCCGGTGACAATCGGCGAAGGCGCATACGTAGCTGCGGGTTCAACGATT 1281
BSNT_00087___ 1282 ACGGAAGATGTACCTGGAAAAGCACTTG-CTATTGCCAGAGCGAGACAAG 1330
||.||.|||||.||.||....|| .||| |||||||||||||.|||||||
BL00520___gca 1282 ACCGACGATGTGCCAGGCCGGGC-TTTGTCTATTGCCAGAGCAAGACAAG 1330
BSNT_00087___ 1331 TAAATAAAGACGATTATG-TGA-AAAATATTCATAAAAAATAA 1371
|.|||||.||.||.||.| ||| ||.||| ||.|||||||||
BL00520___gca 1331 TCAATAAGGAAGACTACGCTGAGAACATA--CACAAAAAATAA 1371
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