Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00096 and BL00513
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:46
# Commandline: needle
# -asequence dna-align/BSNT_00096___yabM.1.5803.seq
# -bsequence dna-align/BL00513___yabM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00096___yabM-BL00513___yabM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00096___yabM-BL00513___yabM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00096___yabM
# 2: BL00513___yabM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1749
# Identity: 1036/1749 (59.2%)
# Similarity: 1036/1749 (59.2%)
# Gaps: 306/1749 (17.5%)
# Score: 2648.5
#
#
#=======================================
BSNT_00096___ 1 ATGGACGATTCAATAGGCGTTAAACGGC--------ATTGGATTTGGCAG 42
|||| |.|| .|||||.||| ||| |.|||||||.
BL00513___yab 1 ATGG--GGTT--------TTTAAAGGGCCAAAGACAATT-GCTTTGGCAA 39
BSNT_00096___ 43 GGGGCTTTTGT--TTTAATTCTGGCAGGCGTCATCA-CAAAAATTTTAAG 89
||.||.||||| |||.|| |||| ||.|..||.| ||||.||.|||||
BL00513___yab 40 GGCGCCTTTGTACTTTCAT--TGGC-GGGGATATTATCAAAGATATTAAG 86
BSNT_00096___ 90 CGCTGTTTACAGAGTCCCGTTTCAAAACATTGTCGGCGATGTTGGATTTT 139
||||||.||.|||||.||.||||||||.||.||.||.|||||.||.||||
BL00513___yab 87 CGCTGTATATAGAGTGCCTTTTCAAAATATAGTTGGAGATGTCGGTTTTT 136
BSNT_00096___ 140 ATATATATCAGCAGGTATATCCCTTTCTTGGTATTGCGGTCATGCTGTCC 189
||||.|.|||||||||.||.||..|..|.||.||..|.||||||||..||
BL00513___yab 137 ATATTTTTCAGCAGGTGTACCCGATGATCGGAATATCTGTCATGCTTGCC 186
BSNT_00096___ 190 ACATCAGGATTTCCAGTCATTATTTCAAAGCTGATGAATGATTATAGTGA 239
||.||.||.||.||.|||||.|||||||||.||.||||||||||..|
BL00513___yab 187 ACCTCCGGGTTCCCGGTCATCATTTCAAAGTTGCTGAATGATTACGG--- 233
BSNT_00096___ 240 AAAAAATCATCACAC----CATATTAAAAATATCAGCGTTGTTTTTG--T 283
.||..||.|| || ||.|.|.||.||| |||.|.|| |
BL00513___yab 234 -----GTCCGCAAACCGGGCA----AAGATTCTCCGCG-TGTCTATGCTT 273
BSNT_00096___ 284 CTTTAATCGGTATT----------TTATTATTTCT-TTGTTTATATCTG- 321
.|||.|||||.|.| ||.||..|||| ||||| ||
BL00513___yab 274 TTTTTATCGGCAGTCGGCCTTGGCTTTTTTCTTCTCTTGTT------TGC 317
BSNT_00096___ 322 -GGTGCTGTTCCTATTGCACTCTTTATGGGGGATTCGCATCTAGCCGTGT 370
||.||.|...|.||.|||...||||||||.|||.|..|.||.||||.|
BL00513___yab 318 CGGAGCCGGAGCCATCGCAGGGTTTATGGGCGATCCCGACCTTGCCGGG- 366
BSNT_00096___ 371 TAATTCAAGTGGCCGCATGCGCG---------TTTC-----TGCTGTTCC 406
||| ||.|||| |||| |||||.|.|
BL00513___yab 367 --------GTG-----ATCCGCGCCGTGTCGTTTTCTTATTTGCTGCTAC 403
BSNT_00096___ 407 CATTTGTCGCGTTGCTTAGAGGCGGTTTTCAGGGGCGGCACGAA---ATG 453
|.||.||..|.|||.|.||||||..||||||.||..| |||| |||
BL00513___yab 404 CGTTCGTATCTTTGTTGAGAGGCTATTTTCAAGGAAG---CGAACGGATG 450
BSNT_00096___ 454 CTCCCTTCAGC-CTTATCACAGATGACAGAGCAGTTTCTGCGTGTTGCGG 502
||.||..|.|| ||| ||.||.||...|||.|||...||.||.|| |||
BL00513___yab 451 CTGCCGACCGCACTT-TCTCAAATTGGAGAACAGACACTCCGGGT--CGG 497
BSNT_00096___ 503 TGC---TCTTGGGTTTATCATTTTGGCTCGTGAAAAAGGGAGCCTCGCTT 549
.|| |||| |.|||..|||..||||||||.|||| |..||.|..|.|
BL00513___yab 498 GGCGATTCTT-GTTTTGACATGGTGGCTCGTCAAAA--GCGGCTTTTCCT 544
BSNT_00096___ 550 TATA--------CTGCGGGAGCGGCAGCCGCTTCAGGCTCTCTTGCTGGA 591
|||| .|||.||.||||| ||| .|||||.||||..||.
BL00513___yab 545 TATATGACGCCGGTGCAGGGGCGGC-----CTT-TGGCTCCCTTGTCGGC 588
BSNT_00096___ 592 AGTTTGGTTGCATTGGTGATACTGGGGGTTTTTTGGTTCAAAACGAAAAG 641
.|..|.|..||.||..|.||.||.|..||.|||||| .|.||.||..||.
BL00513___yab 589 GGCCTTGCGGCGTTTTTCATTCTCGCCGTGTTTTGG-GCCAAGCGTGAAA 637
BSNT_00096___ 642 AGAAAACCA------AACGGAT--AGGCAAAAC-GAAAATGTCATCACAA 682
|||||.||| ..||||| |||| | |.|...||.||
BL00513___yab 638 AGAAAGCCACTGCCGCCCGGATGGAGGC----CGGTACGGGTGAT----- 678
BSNT_00096___ 683 CAAAAGAATTGACGAAAAAACTGCTTTTATATTCGGTTACAATTTGT--- 729
||| ..||||.|.|||..|.|.|||||||||||.||||||
BL00513___yab 679 -------ATT-TTGAAACAGCTGTGTCTGTATTCGGTTACGATTTGTACC 720
BSNT_00096___ 730 GTAAGCAGTTTGCTGCTTTTGTTTATCCAGCTTGTTGATGCTTTGAATTT 779
|...||....|||||.|| .|.||||||||.||.||.||.|||.|.||
BL00513___yab 721 GCCGGCCTCATGCTGATT---CTCATCCAGCTCGTCGACGCATTGCACTT 767
BSNT_00096___ 780 ATATGCATTGCTTTCAGG--------TGG-------TGAGGCAAGCGAAG 814
.|||.|||||||..|.|| ||| |.||||.| ||.
BL00513___yab 768 GTATTCATTGCTGGCCGGACAAGGAATGGGCGAACTTCAGGCGA---AAC 814
BSNT_00096___ 815 AAGCAAAACGCCTGAAGGGGA-TCTATGATCGGGGACAACCGTTGCTGCA 863
|..||||| ||| |.|||||..||||.||.|||.|..||||
BL00513___yab 815 ATACAAAA----------GGAGTGTATGACAGGGGGCAGCCGCTTTTGCA 854
BSNT_00096___ 864 GCTCGGCTCCGTTTTTGCCGTAAGCATTGCGACGTCACTCGTTCCGTATA 913
|||.||..||||||||||.|..||||||||||||.|.||.||.||||...
BL00513___yab 855 GCTGGGAACCGTTTTTGCTGCGAGCATTGCGACGGCTCTTGTCCCGTCCC 904
BSNT_00096___ 914 TTTCTATGGCTGTAAAAAACAAAGAG---CTGAAGATCATGAAAGAAAAA 960
||.|.|..|| .||.|||.|..||| |||.|| |..||.|.|||||.
BL00513___yab 905 TTACGAAAGC--GAAGAAAAAGGGAGAAACTGCAG-TGCTGGAGGAAAAG 951
BSNT_00096___ 961 ATCACGTCATCTTTGAAACTATGCCTTGTGCTCGGTACAGGCGCATCGGT 1010
|||..||..||..|.|||.|..||.||||..||||.||.||.|||.|.|.
BL00513___yab 952 ATCCGGTATTCGCTAAAAATGAGCTTTGTCATCGGCACTGGAGCAGCCGC 1001
BSNT_00096___ 1011 TGGGTTGATTTGCATTCTAAAGCCGGTAAATATCATGCTGTTTCAAAATG 1060
.||..|||||||.|||.|..|||||||.|||.|||||||||||.||||..
BL00513___yab 1002 CGGTCTGATTTGTATTTTGGAGCCGGTCAATGTCATGCTGTTTAAAAACA 1051
BSNT_00096___ 1061 GAGAAGGGACAGGTGCGTTACAAGTATTTAGCTGTTCCATTTTGTTTGCA 1110
|.||.||.||.|.||||.|.|||.|.||.|||...||.|||.|.||||||
BL00513___yab 1052 GCGATGGAACGGCTGCGCTCCAAATTTTCAGCGCGTCGATTCTCTTTGCA 1101
BSNT_00096___ 1111 TCTATGGCGGTAACGGCAGCGGCAGTCTTACAGGGAGCGGGGTACACAGT 1160
||..|||||.|.|||....|.||.||.||.||.|||...||..|.|||..
BL00513___yab 1102 TCGCTGGCGATGACGATGACCGCTGTTTTGCAAGGACTCGGCAATACATG 1151
BSNT_00096___ 1161 TTTTCCTGCGATAGCGGTGGGC-GCGGGTGTTGCGGTGAAATGGGTGTTA 1209
|.||||.||..|..|.||..|| ||||.| ||..|||||||...||.||.
BL00513___yab 1152 TCTTCCGGCTGTTTCCGTCTGCTGCGGCT-TTTTGGTGAAAGCCGTATTG 1200
BSNT_00096___ 1210 AATACACTTTTGGTTCCGCGCTAT-GGGATTGAAGGCGCATCGC--TTGC 1256
||....||..| |.|||.||.|.| ||.|||...||||| ||| ||||
BL00513___yab 1201 AACGAGCTCCT-GATCCCCGGTTTCGGCATTTCCGGCGC--CGCTTTTGC 1247
BSNT_00096___ 1257 GACAGCGGCTTCCTTTGCGGCTGTCGCCGGCCTTAACTTGTATCAGCTTC 1306
|||...|...||.||.||.|||||.||.||.||.||.||.|.||||||
BL00513___yab 1248 GACTATGATGTCATTCGCCGCTGTTGCGGGGCTCAATTTTTTTCAGCT-- 1295
BSNT_00096___ 1307 GGCAAAAGGAATGGCTTGA-TAAGCTTAGAGGCGTTTTGATTCCGATTAT 1355
.|||||.||.||||.|| |||||| .||.||.||.
BL00513___yab 1296 --GAAAAGAAAAGGCTGGATTAAGCT--------------GTCGGAATAC 1329
BSNT_00096___ 1356 TGGAT--CTGCTCTTTTGATGTCAGCTG---TCTTG---------CTTGC 1391
.|||| |.|.|.|||||.||||.|||| ||.|| ||.||
BL00513___yab 1330 AGGATAGCGGGTGTTTTGTTGTCGGCTGTGATCATGTCGGCCGCTCTGGC 1379
BSNT_00096___ 1392 GTATACGCGTCTATGGACTTTCTTG--TTT--------CCTGCAAC---- 1427
| ||.| |.|||| ||| ||| |.|.|.||
BL00513___yab 1380 G-------GTGT---GGCTTT-TTGCATTTGAAGCGGCCATACCACATAA 1418
BSNT_00096___ 1428 AGGAAGAGG------AGCGGCTGTGATTGAGAGCCTTTCTGCTGTTGCCA 1471
|.|.|||.| |||||| .||.||.|||...||.|||
BL00513___yab 1419 AAGCAGATGGATCTCAGCGGC------GGAAAGTCTTAGCGCCGTT---- 1458
BSNT_00096___ 1472 TTGGT-GGC-GCGGTGTTTATTTAT--TGTATGATGAGATTGGGAATATT 1517
||.|| ||| |||.|||.|.|||.| .||||..|.|.||||.|..|.||
BL00513___yab 1459 TTCGTCGGCGGCGTTGTCTTTTTGTCCGGTATCTTCACATTGCGCGTGTT 1508
BSNT_00096___ 1518 TACAGATGAAGAGC-TGAACAGTGTGCCATTCGGCAGCAAG----TTAAG 1562
|.||||..||||.| |||.| .||||||.||.||||||||| |.|
BL00513___yab 1509 TTCAGAAAAAGAACTTGAGC-TTGTGCCTTTTGGCAGCAAGCTCCTGA-- 1555
BSNT_00096___ 1563 CAAATTCATGAGAAGGAGAGAACAAA------------ATGGCGGGTAA 1599
|||.|.||.||| ||| |||||.|||||
BL00513___yab 1556 ------CATTAAAACGAG-----AAAGGGGCGGCAGGCATGGCCGGTAA 1593
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