Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00103 and BL00508

See Amino acid alignment / Visit BSNT_00103 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:46
# Commandline: needle
#    -asequence dna-align/BSNT_00103___divIC.1.5803.seq
#    -bsequence dna-align/BL00508___divIC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00103___divIC-BL00508___divIC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00103___divIC-BL00508___divIC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00103___divIC
# 2: BL00508___divIC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 396
# Identity:     276/396 (69.7%)
# Similarity:   276/396 (69.7%)
# Gaps:          36/396 ( 9.1%)
# Score: 855.0
# 
#
#=======================================

BSNT_00103___      1 TTGAAT--TTTTCCAGGGAACG-AACGATAACTGAAATACAAAACGACTA     47
                     .|||||  |..|.||.|  ||| ||| |||.|..|||||||.|||||.||
BL00508___div      1 ATGAATGATCCTACAAG--ACGCAAC-ATATCGCAAATACAGAACGAATA     47

BSNT_00103___     48 TAAAGAACAAGTAGAACGGCAAA-----ATCAGCTG--AAGAAACGAAGA     90
                     .|||||.||..|.||.||  |||     |.||||||  ||||||  ||||
BL00508___div     48 CAAAGAGCAGATGGAGCG--AAAACAGCAGCAGCTGAAAAGAAA--AAGA     93

BSNT_00103___     91 CGCAAAGGGCTGTACAGACGGTTAACTGTATTCGGCGCCCTAGTATTCCT    140
                     |||   ||.||.|||||||||||.|..||.|||||||||.|.||..|.||
BL00508___div     94 CGC---GGTCTATACAGACGGTTGATGGTTTTCGGCGCCGTTGTGCTGCT    140

BSNT_00103___    141 GACGGCAATTGTGCTGGCAAGCTCTGTATGGTCCCAAACATC----TTCC    186
                     |.||||.||||||.|.|..|||||..|.|||||.||.||.||    .|| 
BL00508___div    141 GTCGGCGATTGTGATTGTCAGCTCGCTCTGGTCGCAGACTTCGGATATC-    189

BSNT_00103___    187 CTTAGTGCAAAAGAAGAAAAGAAAGAACAGCTTGAAAAAGAACT-GAAAA    235
                        ||.||.||..||||.|||||||...|||||...|||.||.| |||.|
BL00508___div    190 ---AGCGCGAAGCAAGAGAAGAAAGCTGAGCTTTTGAAACAATTGGAACA    236

BSNT_00103___    236 GTTTAAAGACAAAACAAACGGATTTAAAAGAAGAAATATCCAAATTGAAG    285
                     |.|..||| |||||.||.|||||||.|||||.||.||....|||||.|||
BL00508___div    237 GCTGGAAG-CAAAAAAATCGGATTTGAAAGATGAGATTGTGAAATTAAAG    285

BSNT_00103___    286 GATGAGGATTACGTCACAGAGCTTGCCAGAAGGGACTTATTCATGTCTGG    335
                     ||.|||||.|||||..|||||||||||||||.||| |||.| |..|||..
BL00508___div    286 GACGAGGACTACGTTGCAGAGCTTGCCAGAAAGGA-TTACT-ACCTCTCA    333

BSNT_00103___    336 A--GACGGAGAAATTATCTTCAA-TGTGGAGAAGAAGAGCAAGTAG    378
                     |  ||.||.|||||.|||||||| |.||.|| |.||||||||||||
BL00508___div    334 AAGGATGGCGAAATCATCTTCAAGTTTGAAG-ATAAGAGCAAGTAG    378


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