Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00103 and BL00508
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:46
# Commandline: needle
# -asequence dna-align/BSNT_00103___divIC.1.5803.seq
# -bsequence dna-align/BL00508___divIC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00103___divIC-BL00508___divIC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00103___divIC-BL00508___divIC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00103___divIC
# 2: BL00508___divIC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 396
# Identity: 276/396 (69.7%)
# Similarity: 276/396 (69.7%)
# Gaps: 36/396 ( 9.1%)
# Score: 855.0
#
#
#=======================================
BSNT_00103___ 1 TTGAAT--TTTTCCAGGGAACG-AACGATAACTGAAATACAAAACGACTA 47
.||||| |..|.||.| ||| ||| |||.|..|||||||.|||||.||
BL00508___div 1 ATGAATGATCCTACAAG--ACGCAAC-ATATCGCAAATACAGAACGAATA 47
BSNT_00103___ 48 TAAAGAACAAGTAGAACGGCAAA-----ATCAGCTG--AAGAAACGAAGA 90
.|||||.||..|.||.|| ||| |.|||||| |||||| ||||
BL00508___div 48 CAAAGAGCAGATGGAGCG--AAAACAGCAGCAGCTGAAAAGAAA--AAGA 93
BSNT_00103___ 91 CGCAAAGGGCTGTACAGACGGTTAACTGTATTCGGCGCCCTAGTATTCCT 140
||| ||.||.|||||||||||.|..||.|||||||||.|.||..|.||
BL00508___div 94 CGC---GGTCTATACAGACGGTTGATGGTTTTCGGCGCCGTTGTGCTGCT 140
BSNT_00103___ 141 GACGGCAATTGTGCTGGCAAGCTCTGTATGGTCCCAAACATC----TTCC 186
|.||||.||||||.|.|..|||||..|.|||||.||.||.|| .||
BL00508___div 141 GTCGGCGATTGTGATTGTCAGCTCGCTCTGGTCGCAGACTTCGGATATC- 189
BSNT_00103___ 187 CTTAGTGCAAAAGAAGAAAAGAAAGAACAGCTTGAAAAAGAACT-GAAAA 235
||.||.||..||||.|||||||...|||||...|||.||.| |||.|
BL00508___div 190 ---AGCGCGAAGCAAGAGAAGAAAGCTGAGCTTTTGAAACAATTGGAACA 236
BSNT_00103___ 236 GTTTAAAGACAAAACAAACGGATTTAAAAGAAGAAATATCCAAATTGAAG 285
|.|..||| |||||.||.|||||||.|||||.||.||....|||||.|||
BL00508___div 237 GCTGGAAG-CAAAAAAATCGGATTTGAAAGATGAGATTGTGAAATTAAAG 285
BSNT_00103___ 286 GATGAGGATTACGTCACAGAGCTTGCCAGAAGGGACTTATTCATGTCTGG 335
||.|||||.|||||..|||||||||||||||.||| |||.| |..|||..
BL00508___div 286 GACGAGGACTACGTTGCAGAGCTTGCCAGAAAGGA-TTACT-ACCTCTCA 333
BSNT_00103___ 336 A--GACGGAGAAATTATCTTCAA-TGTGGAGAAGAAGAGCAAGTAG 378
| ||.||.|||||.|||||||| |.||.|| |.||||||||||||
BL00508___div 334 AAGGATGGCGAAATCATCTTCAAGTTTGAAG-ATAAGAGCAAGTAG 378
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