Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05264 and BL00493

See Amino acid alignment / Visit BSNT_05264 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:21
# Commandline: needle
#    -asequence dna-align/BSNT_05264___yvdJ.1.5803.seq
#    -bsequence dna-align/BL00493___yvdJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05264___yvdJ-BL00493___yvdJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05264___yvdJ-BL00493___yvdJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05264___yvdJ
# 2: BL00493___yvdJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 937
# Identity:     615/937 (65.6%)
# Similarity:   615/937 (65.6%)
# Gaps:         107/937 (11.4%)
# Score: 1876.5
# 
#
#=======================================

BSNT_05264___      1 ATGAAGAATCTG-GAGAATAAAAGCTTTATCATCCGCTGCCTGAAAGCGG     49
                     |||||..|..|| ||.|..|||||| |.|||.||||.|..||.|||||.|
BL00493___yvd      1 ATGAACGACATGCGAAACGAAAAGC-TGATCGTCCGATTTCTTAAAGCAG     49

BSNT_05264___     50 CTGCATCTCCATCAGGTGT-TTGCAGCTATGGGA---ATACCTTCAGCTG     95
                     |.|||||.||..|.||.|| .||| |||   |.|   ||.|.||||||||
BL00493___yvd     50 CGGCATCACCGGCGGGCGTCATGC-GCT---GCAAACATGCATTCAGCTG     95

BSNT_05264___     96 GCTGCAGCTCTCTTTTCTCTTTATGTTTTTAACGGCCTGCTTAATGGCGC    145
                     |||..|..|.||||||||.|||||||||||.||.||.||.||||||||||
BL00493___yvd     96 GCTCGAAATTTCTTTTCTGTTTATGTTTTTGACTGCTTGTTTAATGGCGC    145

BSNT_05264___    146 CGTTAGCGGTTTCGTTTGTGAAAATGGATCGCTTCA--GCGTTGCATCTT    193
                     |..|..|..||.|||||.||||||||||.|||||||  ||...|.|||  
BL00493___yvd    146 CTATGACCCTTGCGTTTATGAAAATGGACCGCTTCAATGCCGGGTATC--    193

BSNT_05264___    194 TTATGC----CGTCAGCGATTCAAGGGGTT--------AATGATCAATTT    231
                     |.||.|    |||| ||   |||||.||.|        |.|.||||    
BL00493___yvd    194 TGATCCCGAACGTC-GC---TCAAGAGGCTGACGCGGCATTCATCA----    235

BSNT_05264___    232 GCTGATCAATTACAGGGTTTTCAAATCAGGAACGGAAAACTAACAGGCG-    280
                         |.||||||.|.||.|..|||.|.|..|||||||.|.|.|..|||| 
BL00493___yvd    236 ----AACAATTAAAAGGCTACCAATTGACAAACGGAAGATTGAAGGGCGA    281

BSNT_05264___    281 GGAAGAGCT---CTGAGAGGATTGAAGATGGGCAGAA-TGTGATGGCAGT    326
                     .||.|||||   |.|.|     ||.|||..||.|||| ..||.||||.||
BL00493___yvd    282 AGACGAGCTGTACCGTG-----TGGAGAAAGGGAGAACCCTGCTGGCCGT    326

BSNT_05264___    327 CGATATGAAGCATGAATATGAGACAAGCGGTGAAAATGGGCGATTGAAA-    375
                     ||||.|||||.||||||...|.|||||||||||.||.|||||..|.||| 
BL00493___yvd    327 CGATTTGAAGGATGAATTAAAAACAAGCGGTGAGAACGGGCGGATAAAAG    376

BSNT_05264___    376 -GTAACTGGATTTGAAAACGCCGTCATATTTCAACCTGATCAACTGGTGA    424
                      |.||  ||.|.|.||||.||..||||.|||||..|.|||||.|||.|.|
BL00493___yvd    377 CGGAA--GGCTATCAAAATGCGCTCATCTTTCAGTCAGATCATCTGATCA    424

BSNT_05264___    425 TCACCGATCAAAACGAAACGGGGTTTTCTGTTGGCTATGCGAAAA----T    470
                     |||..|||||||.||.|.||||||||||.|||.|||||.||..||    |
BL00493___yvd    425 TCAGTGATCAAAGCGGAGCGGGGTTTTCCGTTCGCTATCCGGCAAAGGCT    474

BSNT_05264___    471 GGACGTTAAGCTCGAGAAACCAAACGTCCATGATGTAGA----GGTC---    513
                     ||       |||   ||            |||||.|.||    ||||   
BL00493___yvd    475 GG-------GCT---GA------------ATGATCTGGATGCCGGTCATT    502

BSNT_05264___    514 --------TTGATCGATACATTGTGGTTGGCACAGTATAAGCCGATGATC    555
                             ||.||||.|.||.|||||||.||.||.|||||||||.|.|||
BL00493___yvd    503 TGGGGGATTTTATCGGTGCAATGTGGTTTGCCCAATATAAGCCGCTTATC    552

BSNT_05264___    556 ATGATGCTGGCATATACGGTGGTTTCTATGATCCAGCTTTTGTTAACGTT    605
                     ||.||||||||.|.|.|||.|||||..||.|||..||||||.||||||..
BL00493___yvd    553 ATCATGCTGGCCTGTTCGGCGGTTTTCATCATCTCGCTTTTTTTAACGGC    602

BSNT_05264___    606 TGTTCTTGCAGGTGGCCTCTGGATCACAAAAATATCAAACATGGTCTCTA    655
                     .|||||.||.||.|||.||||||||.|.||||.|||.||||||..|...|
BL00493___yvd    603 CGTTCTGGCGGGAGGCATCTGGATCTCCAAAAAATCCAACATGACCGGGA    652

BSNT_05264___    656 TTGCATCATTCAAGGAAGCAGTATCTACGGCGATTTGCGCCTCGGCACTG    705
                     |....||.||.||||||||.|...|..|||||.|.||||..|||||.||.
BL00493___yvd    653 TAAGGTCGTTTAAGGAAGCGGCCGCAGCGGCGGTGTGCGGATCGGCGCTT    702

BSNT_05264___    706 CCGGCATTTGCGGCAGCTGCTATCGGCATGGTTCA-TTTTGATTTGATTA    754
                     ||||||...||.|||...|||.||||.|| |.||| .|||||.||.||..
BL00493___yvd    703 CCGGCAGGAGCCGCAATGGCTTTCGGTAT-GATCAGCTTTGACTTCATCG    751

BSNT_05264___    755 CTGTATTGATGATCCATTCGTGTGGCGTTACTTTGATGATCTCTTTTGCA    804
                     |..|..||.|.|||||||||||.||...|.||||||||.|||||||  ||
BL00493___yvd    752 CGATGCTGCTCATCCATTCGTGCGGTAGTGCTTTGATGGTCTCTTT--CA    799

BSNT_05264___    805 TTT------AGATATTTGACCAAAACCCGCCGTGATAATGGAAACTTACA    848
                     |||      |.||.||    |||.|.|||||.|.|.||.|.|||..||||
BL00493___yvd    800 TTTTCAGGCACATCTT----CAAGAACCGCCATCACAACGAAAATCTACA    845

BSNT_05264___    849 TTCGGGAGGAAATGATGATAAATCAGCGGTTATTTGA    885
                     .||.|||||||||.|||..||||||||||.|||||||
BL00493___yvd    846 GTCAGGAGGAAATCATGGCAAATCAGCGGCTATTTGA    882


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05264 and BL00493

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
