Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05260 and BL00490
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:21
# Commandline: needle
# -asequence dna-align/BSNT_05260___pgcM.1.5803.seq
# -bsequence dna-align/BL00490___pgcM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05260___pgcM-BL00490___pgcM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05260___pgcM-BL00490___pgcM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05260___pgcM
# 2: BL00490___pgcM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 705
# Identity: 488/705 (69.2%)
# Similarity: 488/705 (69.2%)
# Gaps: 54/705 ( 7.7%)
# Score: 1563.5
#
#
#=======================================
BSNT_05260___ 1 ATGAAAGCGGTCATTTTTGATTTAGACGGAGTGATAACAGATACTGCTGA 50
||||||||||||||||||||.||.|||||.|||||.||.|||||.||.||
BL00490___pgc 1 ATGAAAGCGGTCATTTTTGACTTGGACGGCGTGATCACGGATACGGCCGA 50
BSNT_05260___ 51 ATATCATTTTCTCGCTTGGAAGCACATCGCAGAACAAATCAATATCCCCT 100
.|||||||.||||||.|||||.||.|..||||||||||||...|| |
BL00490___pgc 51 GTATCATTATCTCGCATGGAAACATACTGCAGAACAAATCGGCAT----T 96
BSNT_05260___ 101 ----TTGACAGAGA-CATGAATGAAAGGCTAAAAGGAATCAGCAGAGAAG 145
|||||.| || |.|.||||||.||||.|||||.||||.||||||..
BL00490___pgc 97 GAGATTGACCG-GAGCTTTAATGAACGGCTGAAAGGCATCAACAGAGAGC 145
BSNT_05260___ 146 AGTCACTTGA-AAGCATATTGATCTC-TGGCGGTGCGGAAACAAAGTATA 193
||||.||||| ||| ||.||||| || .|||||.||||....||||| |.
BL00490___pgc 146 AGTCGCTTGATAAG-ATTTTGAT-TCACGGCGGCGCGGCCGGAAAGT-TT 192
BSNT_05260___ 194 CA-AATGCGGAGAAACAAGAACTTATGCATCGGAAAAATCATGATTATCA 242
|| .|.||||||||||||||..|.||||..|||||||||||..|.||.||
BL00490___pgc 193 CAGGAGGCGGAGAAACAAGAGATCATGCGCCGGAAAAATCAATACTACCA 242
BSNT_05260___ 243 AACGCTGATCAGCAAA--TTGACGCCGGAAGATCTTTTACCGGGGATTGG 290
|..||||||| |||| |||||.|||.|.||.||..|.|||||.||
BL00490___pgc 243 ACAGCTGATC--CAAAACTTGACTCCGCACGACCTGCTGCCGGGAAT--- 287
BSNT_05260___ 291 CAGGCTCC------TATGTC-AATTGAAAAACGAAAATATAAAAATCGGG 333
|||| |.||.| |||||||||..|||.||||||..||.|.|
BL00490___pgc 288 ----CTCCGTGCTTTTTGCCGAATTGAAAAGAGAACATATAAGCATTGCG 333
BSNT_05260___ 334 TTAGCATCTTCAAGTCGCAATGCTCCTAAGATTTT-AAGACGTTTGGCAA 382
|||||.||.|||||.||.||.||.|||...||||| .|| ||..|.|...
BL00490___pgc 334 TTAGCTTCGTCAAGCCGAAACGCGCCTGCTATTTTGCAG-CGGCTCGGTG 382
BSNT_05260___ 383 TTATCGATGATTTTGATGCCATTGTTGATCCGACGGCTCTTGCGCAGGGG 432
|.||.||.||.|||.|.|...|.|||||||||.|.||.|||||.||.||.
BL00490___pgc 383 TCATGGACGAATTTCAGGGTGTCGTTGATCCGGCCGCACTTGCTCACGGA 432
BSNT_05260___ 433 AAACCTGATCCTGACATCTTTTTAACAGCTGCAGCGCTGCTCGATGTTTC 482
||.||.||.||.||.||||||||.||.||.||.||.|||||||.|||..|
BL00490___pgc 433 AAGCCCGACCCCGAAATCTTTTTGACGGCCGCTGCACTGCTCGGTGTGCC 482
BSNT_05260___ 483 CCCTGCTGATTGCGCGGCAATAGAAGACGCAGAAGCAGGCATTTCTGCAA 532
.||..||||.||.||.|||||.|||||.||.|||||.||.||..|.||.|
BL00490___pgc 483 TCCGTCTGAATGTGCAGCAATCGAAGATGCTGAAGCCGGGATCGCCGCGA 532
BSNT_05260___ 533 TCAAATCTGCGGGGATGTTTGCGGTTGGTGTAGGTCAAG-GACAGCCGAT 581
|||||||.||.||||||||.|||||.||.||.|||.|.| |||| .||.|
BL00490___pgc 533 TCAAATCCGCAGGGATGTTCGCGGTGGGAGTCGGTGATGAGACA-TCGCT 581
BSNT_05260___ 582 GCTTGGTGCTGATCTGGTTGTGAGGCAGACGAATGATTTGACGCTTGAGC 631
||..||.||.|||.||.|.|||....|.||.||.||..|||||.||||||
BL00490___pgc 582 GCGCGGAGCCGATTTGATCGTGCACAACACAAACGAGCTGACGTTTGAGC 631
BSNT_05260___ 632 TGTTACATGAGGAATGGGAGCAGTAT-----------AGAATAAAAAGTG 670
||.|..||||.|.||||.|||..||| ||||..|||| ||
BL00490___pgc 632 TGCTGAATGAAGGATGGCAGCGCTATTGCTGTATAAGAGAAGGAAAA-TG 680
BSNT_05260___ 671 TTTAA 675
.
BL00490___pgc 681 A---- 681
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