Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05881 and BL00483

See Amino acid alignment / Visit BSNT_05881 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:57
# Commandline: needle
#    -asequence dna-align/BSNT_05881___ywaE.1.5803.seq
#    -bsequence dna-align/BL00483___ywaE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05881___ywaE-BL00483___ywaE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05881___ywaE-BL00483___ywaE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05881___ywaE
# 2: BL00483___ywaE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 528
# Identity:     388/528 (73.5%)
# Similarity:   388/528 (73.5%)
# Gaps:          33/528 ( 6.2%)
# Score: 1372.5
# 
#
#=======================================

BSNT_05881___      1 ATGGAACGTTCACATCAACATCAGCAGCTTCGGAAGGAAGAACACGATAC     50
                      |.|||    .|.|||    .|..||.|||||..|||||||||||||.||
BL00483___ywa      1 -TTGAA----TAGATC----CCCCCATCTTCGACAGGAAGAACACGACAC     41

BSNT_05881___     51 ACTTTCTAAGCTCAAACAAATGCCCGTCGAGTCACTT-AACCTGGAAGCC     99
                     .||....|||||.||.|..|||||..||||.|| ||| ||.||.||||||
BL00483___ywa     42 CCTCAGCAAGCTGAAGCGCATGCCGATCGAATC-CTTGAATCTTGAAGCC     90

BSNT_05881___    100 ATTTCGATCGCTACGAATCTGTATCGGTCTGCACAAAGGCTCCGTGTCAA    149
                     ||||||.||||.||.||.||.||.|||||.||.||||.||||||.|||||
BL00483___ywa     91 ATTTCGGTCGCCACCAACCTTTACCGGTCGGCGCAAAAGCTCCGCGTCAA    140

BSNT_05881___    150 AATGGAGACTGAGGTTCTTTCTTCCTATAACCTTTCTTGGACCGCTTTCT    199
                     |||||||||.|||||.|||||.||.|||.|..|.||||||||.|||||.|
BL00483___ywa    141 AATGGAGACCGAGGTCCTTTCCTCATATCAATTGTCTTGGACGGCTTTTT    190

BSNT_05881___    200 CCATTCTTTATGATCTATGGGTATGGGG-AGCGCTCGAAACGAGAAAAAT    248
                     |.||||||||.||||||||||||||||| || |||.||||||||||||.|
BL00483___ywa    191 CGATTCTTTACGATCTATGGGTATGGGGCAG-GCTTGAAACGAGAAAACT    239

BSNT_05881___    249 CGCTGAGCTGTCAGGGATATCTACAGCTACAGCAAGCAACGTGATCAAAA    298
                     |||.||.||||||||.||.||.|||||.||.||.|||||.||.||.||||
BL00483___ywa    240 CGCCGAACTGTCAGGAATTTCAACAGCCACTGCGAGCAATGTCATTAAAA    289

BSNT_05881___    299 CGCTCGAAAAAAAGAGCTTTTGCCGT-AAAAGC----ATCGACACAAGAG    343
                     ||||.||.|||||||.|||||| ||| ||||||    |||    |.||||
BL00483___ywa    290 CGCTTGAGAAAAAGAACTTTTG-CGTCAAAAGCGCGGATC----CGAGAG    334

BSNT_05881___    344 ATCGGCGACTCGTGTTTGTCTCTATCACCGATTCCGGCAAACAA-----G    388
                     |.||..|||.|||.|..|.|...|||||    .|||| ||..||     |
BL00483___ywa    335 ACCGCAGACACGTTTACGCCGAGATCAC----ACCGG-AAGGAAAAGCCG    379

BSNT_05881___    389 CGATCGAAGAACTCTACCCGGAGTTTCACAAAGGGGAAACAGAGCTCATT    438
                     ||||.|||||.||.||.||||.|||.|||||||||||||||..|||.||.
BL00483___ywa    380 CGATTGAAGAGCTTTATCCGGCGTTCCACAAAGGGGAAACAATGCTGATC    429

BSNT_05881___    439 GCGGGAATGACGAAGGACGAACAGAAAATATTGACAGGGCTGCTTAGAAA    488
                     ..|||.|||||.||.||.||.|||||.|.|||||..|.|||.|||.||||
BL00483___ywa    430 AAGGGCATGACAAAAGAGGAGCAGAATACATTGATCGAGCTCCTTCGAAA    479

BSNT_05881___    489 GGTAGCTGACAATCTTCATACAACATAA    516
                     .||...||||||||||||||.|.|||||
BL00483___ywa    480 AGTGAATGACAATCTTCATAAACCATAA    507


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