Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03836 and BL00467
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:54
# Commandline: needle
# -asequence dna-align/BSNT_03836.1.5803.seq
# -bsequence dna-align/BL00467___yybE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03836-BL00467___yybE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03836-BL00467___yybE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03836
# 2: BL00467___yybE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1109
# Identity: 505/1109 (45.5%)
# Similarity: 505/1109 (45.5%)
# Gaps: 427/1109 (38.5%)
# Score: 892.0
#
#
#=======================================
BSNT_03836 1 ATGGAATGGGAAC-------AATTAGAGTACTTTCAAACTCTTGCTCGT- 42
|.||||| |||| ||..|.|| |.|||| |||
BL00467___yyb 1 ------TTGGAACTCTATCAAATT-GACCATTT------TATTGC-CGTG 36
BSNT_03836 43 -------ATACAGCATGTAACCAAAGCTGC--TGAAACGTTATC-AATAA 82
||| |.||..|.||.|||||.|| ||.||| |.| .||..
BL00467___yyb 37 AGCAGGCATA-AACACTTTACAAAAGCAGCCTTGGAAC---AACGGATTT 82
BSNT_03836 83 CACAGCCAGCACTTT------CTCGGTCTA-----TTGTTAGATTAGAAA 121
|.|||||.| |||| .|||.||.| ||| .||| ||||
BL00467___yyb 83 CCCAGCCGG--CTTTGAGCAGGTCGATCAAAAAGCTTG-AAGA--AGAA- 126
BSNT_03836 122 ATCACTTAGGTGTTCCGCTTTTT----GATAGACAAGGCCGGTC--CATT 165
||.||.||.|||||.||| ||.|.||||...||.|| |.|.
BL00467___yyb 127 -----TTGGGCGTCCCGCTGTTTATTCGAAAAACAAAATCGATCCGCCTG 171
BSNT_03836 166 AAATTAAATAAATATGGGGAAATATTCCTC---------AAGAGGG---- 202
|.| ||.||.||.||....|||||| |||..||
BL00467___yyb 172 ACA------AAGTACGGCGAGCAGTTCCTCATCAAAGCGAAGCAGGCCCG 215
BSNT_03836 203 --TTGATTCCATGA--------TTCGAGAATATACAGAAGGAAAG-GAAG 241
||| .||.||| ||| ||.|.|| ||| |||||| |
BL00467___yyb 216 CCTTG--CCCTTGACGAAGGCGTTC-AGCAAAT-CAG--GGAAAGCG--- 256
BSNT_03836 242 AAATTCAATCTCTTTTAAAACCGGATCAAGGTGAAGTGTCTTTAGGCTTT 291
||||| |||.||...||.|||.|.||..||...|||
BL00467___yyb 257 ----TCAAT-----------CCGAATGCCGGGGAAATCTCGGTATCATTT 291
BSNT_03836 292 TTACACACCCTGGGTACAACAATAG-------TTCCAAATTTAATTG--G 332
||.||.||.||.||| |.| |.||..|..|.|||| |
BL00467___yyb 292 TTGCATACGCTTGGT-------TCGCGGCTCATGCCGCAGCTGATTGCCG 334
BSNT_03836 333 AACGTTTAAAGATAATTACCCAAAAGTTCAATTTCAACTAAACCAGTCTC 382
|| ||||||.|.||.|||||.||.|||...||.|..||..|.|||.|
BL00467___yyb 335 AA--TTTAAAAAGAAATACCCGAATGTTGCTTTCCGTCTGTATCAGGC-- 380
BSNT_03836 383 ACTCTAATTTGCTTTTAGATAAACTAAAATCA------GGTG-------- 418
|.|.||| ||..|.|| ||| ||||
BL00467___yyb 381 -CGCAAAT---------GAACATCT----TCAGCACATGGTGGAGACGGG 416
BSNT_03836 419 ---AGCTTGATCTCTGCCT-ACTTGCTTCT------TTTCCAGTCGA--A 456
||| ||||.||||||| | || ||| .|||||..||| |
BL00467___yyb 417 CGAAGC-TGATATCTGCCTCA---GC-TCTCCGCCGCTTCCAAACGAGCA 461
BSNT_03836 457 TCAAATATAATG--------TGGAAACCCTTATGGAAGGAGGAGCTTTTT 498
|| |..|||| ||||.|| .|||..|||||.|
BL00467___yyb 462 TC---TTGAATGGACGGTGTTGGATAC----------TGAGCCGCTTTAT 498
BSNT_03836 499 TTATTTTTGCCA------------------------AAAAAACATGTGTT 524
.|..|..|.||| |||.|
BL00467___yyb 499 CTGGTGCTTCCAGCCGACCACCCGCTTGCAGATCGGAAAGA--------- 539
BSNT_03836 525 AGCTACTCGTGA---GGAT--ATTACGTTAAACGAAATAGCTAATGAGCC 569
|.|||.|| || | |||.| |.|||| ||.|
BL00467___yyb 540 ----AGTCGCGATCCGG-TCGATTGC---ACACGA-----------AGAC 570
BSNT_03836 570 TTT---TGTTTTAATGAAAGAAGGTTTCGCC----------CTTCGAGTG 606
||| |||||||| ||| ||||||
BL00467___yyb 571 TTTGTCTGTTTTAA--------------GCCGGGCTATGGTCTTCGA--- 603
BSNT_03836 607 ACAATAGATGATATTTTTGAGCAAGTTAAT----------------ATTA 640
.||.|.|||||.|| ||| ||.|
BL00467___yyb 604 ---------TATGTGTTTGATCA----AATGTGCCGGGGACTGTCCATCA 640
BSNT_03836 641 CCCCAAACATTGTATTTGAAGGTGAAGAAGCTACAACAATCGCAGGTTTT 690
.|||.||..|||..||||||||.||||||| ..|||..|.||||
BL00467___yyb 641 GCCCGAAGCTTGCTTTTGAAGGGGAAGAAG-------TGTCGACGATTTT 683
BSNT_03836 691 -------GTTGCAGCGGGTCTTGGTGTTTCAATTCTCCCTGATTTTAAA- 732
||..||||.||.||.|||||..||||.||.|| || |||
BL00467___yyb 684 GGGACTAGTATCAGCAGGGCTCGGTGTAGCAATCCTGCC-GA----AAAC 728
BSNT_03836 733 GGCTTAG-----------ACCAAACGAATATCGCAAAGGTTCGGATTAGT 771
|||..|| .|||...|.||.|.||..||..||.||.||
BL00467___yyb 729 GGCGGAGCACGTCCATTCTCCAGTGGCATTTTGCCGAGTGTCAGACTA-- 776
BSNT_03836 772 TGGCCAAGGTT-TGAGCGTACAGTTGGCCTC----TCTTGGATTAAAGGG 816
|| ||| ||||.|.||..|.||.||| ||.|| ||||
BL00467___yyb 777 ---CC---GTTCTGAGAGGACGATCGGTCTCGCCGTCCTG----AAAG-- 814
BSNT_03836 817 AAGCACCTATCACCTGTCACTG-------AAAACTTCAAGCAAT------ 853
||| ||.|..||||.|.| ..|||||.||..|||
BL00467___yyb 815 ----ACC-ATTATTTGTCGCCGGCGGCACGCAACTTTAAAGAATTTGTAA 859
BSNT_03836 854 ----ATATCATC-----------------AATCAGTTTCCTCAAATAGAT 882
|||..||| .||||| ||..||
BL00467___yyb 860 TTGAATACTATCGCCGGAACGAACGGTCTGATCAG---CCGTAA------ 900
BSNT_03836 883 TCGATATAG 891
BL00467___yyb 900 --------- 900
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