Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00984 and BL00455
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_00984___ydhD.1.5803.seq
# -bsequence dna-align/BL00455___ydhD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00984___ydhD-BL00455___ydhD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00984___ydhD-BL00455___ydhD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00984___ydhD
# 2: BL00455___ydhD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1363
# Identity: 842/1363 (61.8%)
# Similarity: 842/1363 (61.8%)
# Gaps: 203/1363 (14.9%)
# Score: 2152.5
#
#
#=======================================
BSNT_00984___ 1 ATGTTTATCCATATCGTCGGGCCTGGTGATTC----TTTGTTTTCGATAG 46
.|||||||..|||..|||..|||.||.||||| ||||| .||.|
BL00455___ydh 1 TTGTTTATTTATACAGTCCAGCCGGGAGATTCACTATTTGT----CATCG 46
BSNT_00984___ 47 GCAG--AAGATACGGTGCTTCTGTTGATCAAATACGGGGTGTGAATGGTT 94
|| | ||| |.|||...|||..||||.||.||.||....|.||||||.|
BL00455___ydh 47 GC-GCCAAG-TTCGGAATTTCGATTGACCAGATCCGATTGGCGAATGGGT 94
BSNT_00984___ 95 TAGAT-GAAACGAATATCGTGCCGGGGCAGGCTCTGCTTATCCCTCTTTA 143
| ||| |.|||.||.||.||.||.||.||||||||..|.||.||.|||||
BL00455___ydh 95 T-GATCGCAACAAACATTGTCCCCGGACAGGCTCTTTTAATACCGCTTTA 143
BSNT_00984___ 144 TGTATATACAGTCCAGCCTGGAGA----TACGCTTAC-CGCCATTG-CAG 187
|..||||||.||.|||||.||||| || |||| || |||| |.|
BL00455___ydh 144 TACATATACCGTTCAGCCGGGAGACAGTTA---TTACACG--ATTGCCCG 188
BSNT_00984___ 188 CCAAAGCGTTTGT-GCCATTAGAGCGACTGCGAGCCGCCAATCCGGGCAT 236
||..| ||||||| .||.|...||| |.|||.|...||.|||||| |
BL00455___ydh 189 CCGGA-CGTTTGTATCCGTCGAAGC-ATTGCAAAAAGCAAATCCG----T 232
BSNT_00984___ 237 C---AGCCCAAATGCTT----TACAAG--CGGGAGCAAAAATAACGATTC 277
| |.||| ||| ||..|| ||||...||||.|.|.|||||
BL00455___ydh 233 CTGTAACCC-----CTTCCAATATGAGGCCGGGGATAAAAGTGATGATTC 277
BSNT_00984___ 278 CTTCGATCTCAAATTACATTGCGGGAA-------------CGTTAAGTTT 314
| .|| |||||.|.|| |.|||.|.|.
BL00455___ydh 278 C--GGA-----------ATTGCCGAAAAAACCGATCACTGCTTTAGGATA 314
BSNT_00984___ 315 TTACGTGCTCCGAAATCCTGACC---TCGATCGGGAATTAATCAATGATT 361
||||...||..||||.|| || |.||.|.||||||.||..||.|||
BL00455___ydh 315 TTACACACTGAGAAACCC---CCGGTTAGACCAGGAATTGATTCATAATT 361
BSNT_00984___ 362 ATGCGCCATACTCGTCTTCGATTT--CGATTTTCGAATACCATATTGCAC 409
.|||.||||||.|..|.| ||.| |..||||.||||||||.|||.||
BL00455___ydh 362 TTGCCCCATACGCCACGT--ATCTGGCATTTTTTGAATACCACATTTCA- 408
BSNT_00984___ 410 CGAACGGCGAC--ATTG-CAAACCAATTGAATGAT---GCGGCCGCTATT 453
.||||| ||.| .||.|.|..|||||||| .||||||
BL00455___ydh 409 -----AGCGACGGATCGTTAAGCGAGCTGAATGATTCACCGGCCG----- 448
BSNT_00984___ 454 GAGACAA----CATGGCAAAGACGG---GTGACGCCGCTGGCA--ACAAT 494
.|||| |.||| |||||| ||..|.||.|| || |||.|
BL00455___ydh 449 --TACAAACGGCTTGG---AGACGGCGCGTTCCTCCCCT--CATGACAGT 491
BSNT_00984___ 495 AACGAACCTTAC---ATCAGGAGGCTTCAGTACGGAGATTGTTCACCAAG 541
.||.||.||.|| ||| ||||||||||.||....|||..||||..|
BL00455___ydh 492 CACCAATCTAACTGAATC---AGGCTTCAGTCCGTCTCTTGCGCACCGCG 538
BSNT_00984___ 542 TGCTAAACAATCCGACAGCGAGAACCAAT---CTGGTCAACAACATT--- 585
|..|| ||||.|.|.||...||..||| ||..||.||||.|||
BL00455___ydh 539 TATTA---AATCAGCCTGCCGTAAGAAATCGCCTCATCGACAATATTGTC 585
BSNT_00984___ 586 --TATGACTTAGTTTCCACAAGGGGATATGGCGGTGTCACAATCGATTTT 633
.|.|| ||||||.||..|||||||..||.||||..||.|||||.
BL00455___ydh 586 CAAACGA-----TTTCCAGAAAAGGATATGCAGGCGTCAATATTGATTTC 630
BSNT_00984___ 634 GAGCAGGT----GAGCGCCGCGGATCGCGA--TCTTTTCACTGGGTTTT- 676
||.|||.| ||| |..||..|.|| |.|||||| ||||||
BL00455___ydh 631 GAACAGATTTTGGAG----GAAGACAGAGATTTATTTTCA---GGTTTTC 673
BSNT_00984___ 677 TACGCCAGCTGAGAGATCGCCTTCAGGCGGGAGGGTATGTGCTGACGATA 726
|.||||.|.|||.|||.||.||..||.||...||.||||||.|||||||.
BL00455___ydh 674 TCCGCCTGTTGAAAGAGCGGCTGAAGCCGTCCGGCTATGTGTTGACGATT 723
BSNT_00984___ 727 GCTGTTCCGGCAAAAACAAGCGATAATATTCCCTGGCTGAGAGGCTACGA 776
||.||||||.|.|||||||..||.|||||..|||||||||.|||.||.||
BL00455___ydh 724 GCCGTTCCGCCGAAAACAAATGAAAATATCGCCTGGCTGAAAGGGTATGA 773
BSNT_00984___ 777 TTACGGGGGGATAGGAGCGGTTGTCAATTATATGTTTATCATGGCTTATG 826
.||.||.||.||.||.||.||...|.|...|||.||.||||||||.||.|
BL00455___ydh 774 CTATGGCGGAATCGGTGCAGTGAGCGACCTTATCTTCATCATGGCATACG 823
BSNT_00984___ 827 ATTGGCATCATGCCGG---AAGTGAGCCGGGTCCTGTAGCGCCGATTACT 873
|.|||||.|| ||| |||.|||||.||.||..|.||.|||||.|.|
BL00455___ydh 824 ACTGGCACCA---CGGGACAAGCGAGCCCGGCCCCATTGCTCCGATCAAT 870
BSNT_00984___ 874 GAAATAAGGAGAACCATTGAGTTTACGAT-TGCG-CAGGTGCCGAGCAG- 920
|||.|..||..|||.|||.|.||| |.| |.|| ||.||.||.| .||
BL00455___ydh 871 GAAGTCCGGCAAACAATTCAATTT--GCTCTCCGCCATGTCCCCA-AAGA 917
BSNT_00984___ 921 AAAAATCATTATCGGAGTCCCGCTCTACGGGTACGACTGGATCATCCCGT 970
|||||||.||.||||..|.|||||.|||||.||..||||||.|.|.||.|
BL00455___ydh 918 AAAAATCGTTCTCGGCTTTCCGCTTTACGGCTATAACTGGACCCTGCCCT 967
BSNT_00984___ 971 ACCAGCCGGGCACAGTTGC----TTCAGCG--ATTTCAAATCAAAACGCA 1014
|.|||||.|| ||| |.|..|| ||..|.||.|||.||||.
BL00455___ydh 968 ATCAGCCCGG------TGCCGTATACCCCGGAATCGCCAACCAAGACGCC 1011
BSNT_00984___ 1015 ATCGAAAGAGCGATGAGGTACCAATCCCCGATACAATATTCAGCCGAATA 1064
.|..|....||.||||.|.||||..|.|||||.||||| |.|..|.|||
BL00455___ydh 1012 GTTCAGCTCGCCATGAAGCACCAGGCACCGATTCAATA-TGATACAAAT- 1059
BSNT_00984___ 1065 TC--AATCACCGTTTTTCCGGTACAGTGATCAGCAGGGGCGGAC-GCATG 1111
|| |.||.||.||||||.|.||||..|||.|.|| ||||.||| |||||
BL00455___ydh 1060 TCTGAGTCCCCTTTTTTCAGATACACCGATGAACA-GGGCAGACGGCATG 1108
BSNT_00984___ 1112 AGGTATGGTTTGAGGATGTCA-GAAGCATGAGCCGGAAGA----TGCAGA 1156
..|||||||||||.||.| || |.||||| |||||.| |||||.
BL00455___ydh 1109 TCGTATGGTTTGAAGACG-CACGCAGCAT----CGGAAAAAAACTGCAGC 1153
BSNT_00984___ 1157 TCGTCCGCGAATACAGATT-----GCAGGCTATTGGCGCTTGGCAGTTAA 1201
|..||..|||||||.||.| || ||| ||||..||||||.|.|
BL00455___ydh 1154 TGATCACCGAATACGGACTTGACGGC-GGC----GGCGTCTGGCAGCTCA 1198
BSNT_00984___ 1202 CGCTGGGCTTTACACCGGGCCCATGGCTTCTGCGGAAATTTTTTACG-AT 1250
|.||..|.|||.|.|..||..|||||||..||...|||||.||| || .|
BL00455___ydh 1199 CACTCAGTTTTCCGCAAGGAACATGGCTCTTGACCAAATTCTTT-CGCGT 1247
BSNT_00984___ 1251 CAGAAAAGTGTAA 1263
|.|||||||.|.|
BL00455___ydh 1248 CCGAAAAGTCTGA 1260
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