Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03913 and BL00454

See Amino acid alignment / Visit BSNT_03913 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:55
# Commandline: needle
#    -asequence dna-align/BSNT_03913___yraD.1.5803.seq
#    -bsequence dna-align/BL00454___yraD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03913___yraD-BL00454___yraD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03913___yraD-BL00454___yraD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03913___yraD
# 2: BL00454___yraD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 342
# Identity:     190/342 (55.6%)
# Similarity:   190/342 (55.6%)
# Gaps:          84/342 (24.6%)
# Score: 493.5
# 
#
#=======================================

BSNT_03913___      1 ATGAATCCTA--TCATAGAATATCTGACTGGCATGAATGTTCTGACAGAC     48
                     |||||  |.|  ||||..||.|..||||.||||||...|...||||.||.
BL00454___yra      1 ATGAA--CGAATTCATCCAAAACATGACAGGCATGGGCGCGATGACTGAA     48

BSNT_03913___     49 CAAATCATCGCTATGGACTTATTAATTTCAGCAAAAAACGGAGTCAGAAA     98
                     |||.||||.||.|..||.||.|||||.||.|||||||.|||.||||.|||
BL00454___yra     49 CAAGTCATTGCCACCGATTTTTTAATCTCGGCAAAAACCGGTGTCAAAAA     98

BSNT_03913___     99 TTATGCGATGGCAGC---CACTGAAGCCGGAACA------CCTGAAGT--    137
                     ...|||.|   ||||   |||.||      ||||      ||.|||||  
BL00454___yra     99 CATTGCCA---CAGCTATCACGGA------AACATCTTCTCCAGAAGTGC    139

BSNT_03913___    138 ---AAAAGAGGTCCTTATCCGCCATTTGGAAGAAGCCCTTGATATGCACG    184
                        |||.|     ||||..|...||||..|.||.||..||||.|..||.|
BL00454___yra    140 GCGAAACG-----CTTAAGCAGTATTTAAACGACGCGATTGACACCCATG    184

BSNT_03913___    185 AACAACTCTCGAGCTATATGATGGAAAAAGGCTGGTACCATCCTTGGAAC    234
                     ||||..||.|.|.|||||||||....|||||.|..|||||||||..||| 
BL00454___yra    185 AACAGATCACAAACTATATGATTTCCAAAGGGTATTACCATCCTGCGAA-    233

BSNT_03913___    235 ACTGACGAACAAGTCAAGCTGAATTTACAAA---ATATTGATAC---AGC    278
                                  |..|.||||    |||||   |.||||||||   |||
BL00454___yra    234 -------------TTTATCTGA----ACAAATTCAGATTGATACCAAAGC    266

BSNT_03913___    279 GATTCAATTGCCGA----------------CC----CTTTAA    300
                             ||||||                ||    ||.|||
BL00454___yra    267 --------TGCCGAAACGGCTAAAGATCTTCCGCAACTGTAA    300


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.