Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04317 and BL00435
See
Amino acid alignment /
Visit
BSNT_04317 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:27
# Commandline: needle
# -asequence dna-align/BSNT_04317___ytrP.1.5803.seq
# -bsequence dna-align/BL00435___ytrP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04317___ytrP-BL00435___ytrP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04317___ytrP-BL00435___ytrP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04317___ytrP
# 2: BL00435___ytrP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1961
# Identity: 1109/1961 (56.6%)
# Similarity: 1109/1961 (56.6%)
# Gaps: 481/1961 (24.5%)
# Score: 2882.5
#
#
#=======================================
BSNT_04317___ 1 ATG-GTAGAACAAACTAAAGATCAATTATCCGCCTTTCATTATCATA--- 46
||| .|| ||||||||.||||.|.| ||||.|.|||| |.||||.|
BL00435___ytr 1 ATGAATA-AACAAACTGAAGACCTA-TATCTGACTTT--TCATCAAAAGC 46
BSNT_04317___ 47 TGCTTGATTTTTTATTAACCAAATCTGAAAAA-------GTCACATTCAC 89
||.||.|.|||||.||| ||||| |||.|.|.|..
BL00435___ytr 47 TGTTTCAATTTTTTTTA----------AAAAAGCCGGCCGTCTCGTACGA 86
BSNT_04317___ 90 CGACTCTTTCATATGGCTGACT----TCGGC----TATTCAAACCTATTT 131
|||||||.| ||.|||.|| .|||| .|.||| |.|||
BL00435___ytr 87 CGACTCTGT----TGCCTGGCTAAAAGCGGCAGCAGAGTCA----TTTTT 128
BSNT_04317___ 132 TTCAACCCTTTGTGTT----TCGCTTACA------CCGTCATCATCAGAC 171
||| ||| ||.||.||| ||.||.||| ||||
BL00435___ytr 129 TTC----------GTTTATATCTCTAACAGTGCAGCCTTCTTCA--AGAC 166
BSNT_04317___ 172 TTTGTGACAAAACAGGCAGATGGAGAAGCG-CGTTTTTCCGCT------- 213
| .|||| |||.||||.||| ||.|..||||.|
BL00435___ytr 167 T----------GCAGG--GATCGAGAGGCGACGGTGATCCGATCAGACGA 204
BSNT_04317___ 214 -----------TC----------AAAAAT------AAAC-GC-------- 227
|| ||.||| |||| ||
BL00435___ytr 205 GTGAGCGATTATCATACCATTATAACAATAGAAGAAAACAGCAAATATAT 254
BSNT_04317___ 228 ------TTCATG----------------TTACCTGATTGAGGACGGCTC- 254
|||||| ||||| ||.|||.|||
BL00435___ytr 255 AGAACTTTCATGTCAAAAGAAACATAAATTACC------AGAACGTCTCG 298
BSNT_04317___ 255 CGG--------CAGGTGTTTCCATCTTGCGTGCA--GGCAGGATGAAGAG 294
||| ||..||||| ||| ||||| |.|.|||
BL00435___ytr 299 CGGAATCCATTCATCTGTTT-----TTG-GTGCATTGTCTGGA------- 335
BSNT_04317___ 295 ATTCCTGAAGGGCTTCCGGACGTGGTTGCTTCGTTTTTAAACCAGTCGAT 344
|||| |||| ..||..||||| |||
BL00435___ytr 336 -----------GCTT---GACG-CATTATTTCGT-------------GAT 357
BSNT_04317___ 345 GAAACAGGAAAGACTCTATAATAAAACGATCTACCAAAAAAAGATATACA 394
|| .|| |||.||||| ||||||.||..
BL00435___ytr 358 GA------------GCT-TAAGAAAAC------------AAAGATTTATG 382
BSNT_04317___ 395 AAATGACGGAGCTGTTCCATTCACTGCTTGATCAG--ACAGATGTGCTGA 442
|||.||||||||||.|.|||...|||.|.|||||| .||| |||||||
BL00435___ytr 383 AAAAGACGGAGCTGCTGCATGAGCTGATGGATCAGGAGCAG--GTGCTGA 430
BSNT_04317___ 443 AG-CA--GCTTTTAGAAAGCTTGACCAGCACAT---TTTCTCTTTTTGA- 485
|| || || |.||||||||.|..|| | |||| ||||||.|
BL00435___ytr 431 AGACAATGC---TCGAAAGCTTAAGGAG----TGTGTTTC-CTTTTTTAA 472
BSNT_04317___ 486 -GTTTTCTTTATTTATATCGCACGATCAAGACCAATGTTTAGGGA----- 529
||.||.|.|.||..|.||..|||||.|.||.|||| |
BL00435___ytr 473 CGTATTGTCTTTTCTTGTCATACGATGAGGATCAAT--------ACATCA 514
BSNT_04317___ 530 ---TTCCTGCAAAAGAGCTGTATATGGAAGGGGAAAAATCCGATTCCTTT 576
|.|||||.|.||||.||.||.||.||.|.|||....|||||||.|||
BL00435___ytr 515 ACCTCCCTGCGATAGAGTTGGATGTGCAAAGCGAATCGACCGATTCTTTT 564
BSNT_04317___ 577 GCGCTCAAAGTGTATTTGTCCGGA---GACATTTTGCGGAAAAATGAATC 623
||..|..|.|..||.||.||.||| ||.| .|.|.|||||||||.|
BL00435___ytr 565 GCCTTGGAGGCATACTTATCAGGACAGGAGA---AGAGCAAAAATGAAGC 611
BSNT_04317___ 624 TGCCGCCTATATTCCGATCAAAGGACAGCAGGGCACATACGGGGTGTTGA 673
.|..|..||.||||||||.|||||.|.||||||.||.|||||.||.||||
BL00435___ytr 612 GGAAGTATACATTCCGATTAAAGGCCGGCAGGGAACGTACGGCGTTTTGA 661
BSNT_04317___ 674 AGGCTGAAGGAACGGGTG--------ACAGCTTTCTTGCTGATGCCTGCC 715
|.||....|||.|.||.| ||.|| .||.|||...|||.
BL00435___ytr 662 AAGCCTTTGGACCAGGCGCTGCCGATACGGC-----AGCGGATATATGCA 706
BSNT_04317___ 716 TTGATGAAATGTCGATGTTAGCAAACGCCGCGGGAAAAGCGTTTGAAAAT 765
|| ||.||| ||.||.||.||.|||||.|||||||||
BL00435___ytr 707 TT------ATTTCG---------AATGCGGCAGGGAAAGCATTTGAAAAT 741
BSNT_04317___ 766 GCCCAGCTCTACGAACAATCCAAAGCA----AGCATCGCAAATTTGGAAT 811
.|.|.|||.||||||||.|| ||| |..||..||||||||||..
BL00435___ytr 742 TCACGGCTTTACGAACAGTC----GCAGAATATGATTTCAAATTTGGAGC 787
BSNT_04317___ 812 TGATTAATGAAACATCACGACGCCTGAATCAGCGG---CTGACATTGA-- 856
|||||||||||||||| |.||||||.| |.||| ||
BL00435___ytr 788 TGATTAATGAAACATC---------GCATCAGCTGAACCGGAC---GAAA 825
BSNT_04317___ 857 -------CTGATACAATGAATGATCTGGCTGTGAGAATGGCAGAATCGTT 899
|.||||..||||| ||.|| |||..|||.|||.| |||..|
BL00435___ytr 826 CGCCTTCCGGATATGATGAA-GAGCT---TGTCCGAAAGGCTG-ATCAGT 870
BSNT_04317___ 900 TCA-----GGCAGAAGAAGTGGGATTTTTTCATATAGACCATTTTGAAAA 944
||| .||.|||||.|||||.||||||.|||.|.|.||.||.|.|||
BL00435___ytr 871 TCATTCGGCGCCGAAGAGGTGGGCTTTTTTTATAAAAATCACTTAGGAAA 920
BSNT_04317___ 945 CCTAACATTGCTCCCAGGCAGCAC-AGCATTTTTTAAAGAAGCGAAGCAG 993
...|||..||||.||.|..||||| ||..||||| |||
BL00435___ytr 921 GGAAACCCTGCTGCCGGAAAGCACTAGTTTTTTT-------------CAG 957
BSNT_04317___ 994 TCAGAT-------TTTTATA-ATGAGC----TGAAAGAAAAGCTGTATGA 1031
.|.||| ||..||| ||..|| |.|||||.||| .|||.|
BL00435___ytr 958 ACGGATGAGGCCCTTCCATACATCCGCTATGTCAAAGAGAAG--ATATCA 1005
BSNT_04317___ 1032 -AGGTGAAAAAGGGGTTTTCATCGGGAATGGCCAGTCTGTTTTTGGGAAG 1080
|| |||||.|||||.||..||||.||.||....||..||||||||||.
BL00435___ytr 1006 GAG--GAAAACGGGGTGTTTGTCGGAAACGGTTCTTCGCTTTTTGGGAAT 1053
BSNT_04317___ 1081 GCGGGGTACGGCTCGCTGATGGCTGCTCCGATG---------ATTCAAAA 1121
|..||.||.|..||..|.||||..|.||||||| |.|.||||
BL00435___ytr 1054 GAAGGATATGCTTCATTAATGGGCGTTCCGATGCTGGAAAATAATGAAAA 1103
BSNT_04317___ 1122 CGACCGGCTTTTAGGCTTTG----CGGTTTTATTGAAACAGGAGCTGTAC 1167
|.| |||.|||| || |.||||||.|..|..|.|.|
BL00435___ytr 1104 CAA---------AGGGTTTGTCATCG----TGTTGAAAAAAAACGTCTGC 1140
BSNT_04317___ 1168 GCTTTTACATTTGAAATGTACAAGCTGTTTCAGGCGCTGAT---TCAT-- 1212
.|.|||.|.|||||.||||..||||||||||||.||||||| .|||
BL00435___ytr 1141 TCCTTTTCGTTTGAGATGTTTAAGCTGTTTCAGACGCTGATCAGGCATTC 1190
BSNT_04317___ 1213 CACGCGACACTGGCTGTAACCAATTCAATGCTTCGCGACCGCCTTGAGCA 1262
|||| ||.||.|||.|.||||..|||||.||||||||.||..||.|
BL00435___ytr 1191 CACG-----CTCGCCGTATCGAATTTGATGCTGCGCGACCGGCTGAAGTA 1235
BSNT_04317___ 1263 TCTCGTGAAAACAGATCAGCTGACTGAACTGTTTTC-ACGAGCGTATTTA 1311
|||.||..|.|||||.|...||||.||.||.|..|| |..||| .||.|.
BL00435___ytr 1236 TCTTGTTCAGACAGACCGTTTGACAGAGCTCTACTCGAGAAGC-CATCTC 1284
BSNT_04317___ 1312 GATGAAAAAATCCAATACAGCATGAAAATCCACCAAAAGGGTGT--TTTT 1359
|||||.||||||...|||||.||||||.|..||.|.|..||.|| |..|
BL00435___ytr 1285 GATGAGAAAATCGGGTACAGTATGAAATTGGACGAGAGCGGCGTCCTCGT 1334
BSNT_04317___ 1360 ATTCTTG-TTGATATTGATAATTTTAAAAATGTAAATGATACGTACGGCC 1408
| ||| |.|||||.|||.||||||||.|..|.||.|||||||||||||
BL00435___ytr 1335 A---TTGATCGATATCGATGATTTTAAACAGATTAACGATACGTACGGCC 1381
BSNT_04317___ 1409 ATCAGACTGGGGACGAGATTTTAATTCAAGTCGCTTCAGTGATTAAAAGC 1458
||||||..||.||.||.|||.|.||.||||||||....|||||..|..|.
BL00435___ytr 1382 ATCAGAAAGGCGATGATATTCTTATACAAGTCGCCCGGGTGATCCAGCGA 1431
BSNT_04317___ 1459 AACATCCGAAAGCATGATGTCGGTGCCCGCTGGGGAGGCGAGGAACTGGC 1508
||||||||..|.||.|||||||..||..|.||||||||.||.||.||.||
BL00435___ytr 1432 AACATCCGCGATCAGGATGTCGCAGCAAGGTGGGGAGGAGAAGAGCTTGC 1481
BSNT_04317___ 1509 GATTTATTTGCCAAATG----------TGCCGGTTGCAGTGGGGAAACGG 1548
|.|.||.|||||.||.| .|||||| |||| .|
BL00435___ytr 1482 GGTATACTTGCCGAAAGCAAGGCTGAACGCCGGT---------GAAA-TG 1521
BSNT_04317___ 1549 ATTACCGAGCG------ACTGGTTTACGCAGTCAGAAAAAATACGAAACC 1592
.||.||||..| |.||.|| |||||..||..|||| .|.|
BL00435___ytr 1522 CTTGCCGAAAGGCTCATAATGCTT------GTCAGGGAATGTACG-GATC 1564
BSNT_04317___ 1593 CGA-GGTAACCATTTCCTGC--GGTATCTCCTGCTGGACGACAGAAACAA 1639
||| |||.||.|||||.||| ||||||.|.| |||.| .|||.|
BL00435___ytr 1565 CGACGGTGACGATTTCGTGCGGGGTATCCCAT--TGGTC-TCAGGA---- 1607
BSNT_04317___ 1640 AAAAGTCG-CTGAAA---------GAGCTTGTGCATGAGGCAGATGAAGC 1679
||| |.|||| ||.|||.|..|.||.||.||||..||
BL00435___ytr 1608 -----TCGTCCGAAATCTTTATCCGACCTTTTTAAAGAAGCGGATGTCGC 1652
BSNT_04317___ 1680 GCTCTACAGCGCGAAACGGAGCGGGAAAAACCGCTTGATGATTCATGACT 1729
|||.||||..||.||.||||.|||||||||| |.| ||.|||||.
BL00435___ytr 1653 GCTGTACAATGCAAAGCGGAACGGGAAAAAC------AAG-TTTATGACA 1695
BSNT_04317___ 1730 CAATAAAATAA 1740
||.|||
BL00435___ytr 1696 CATTAA----- 1701
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.