Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04299 and BL00425
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:26
# Commandline: needle
# -asequence dna-align/BSNT_04299___sppA.1.5803.seq
# -bsequence dna-align/BL00425___sppA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04299___sppA-BL00425___sppA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04299___sppA-BL00425___sppA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04299___sppA
# 2: BL00425___sppA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1084
# Identity: 734/1084 (67.7%)
# Similarity: 734/1084 (67.7%)
# Gaps: 152/1084 (14.0%)
# Score: 2441.0
#
#
#=======================================
BSNT_04299___ 1 ATGAATGCAAAAAGATGGATTGCATTAGTGATTGCTCTGGG-GATTTTCG 49
||||||||.|||||||||||.|||.|.||.||.||.||||| |.||||
BL00425___spp 1 ATGAATGCGAAAAGATGGATCGCACTTGTCATCGCGCTGGGCGTTTTT-- 48
BSNT_04299___ 50 GCGTGTCTATTATC----GTCAGCATCTCTATGAG--------TT----T 83
||| ||||| || .||||| || |
BL00425___spp 49 GCG------TTATCTGCGGT---------GATGAGCCTTTTGCTTGCAGT 83
BSNT_04299___ 84 CTTTGAAAGCGTCAAAGGCGCTCAA--ACGGA---------TCTCACATC 122
.|||||.| |.|.||.| || ||||| |.|..|.||
BL00425___spp 84 ATTTGACA----CGATGGGG---AATGACGGAAAGATGCAGTTTGGCCTC 126
BSNT_04299___ 123 ACTGACGGATGAATCGCAGGAAAAGAC---GCTGGAAAACGG---CAGTC 166
| ||||..|.||||||.|.|| |||.|||.|.|| |||
BL00425___spp 127 A-------ATGACACCCAGGAAGAAACGGTGCTTGAACAAGGAAACAG-- 167
BSNT_04299___ 167 TCTCAAGTAAAATTGCCGTATTAGAGGTCAGCGGCACCATTCAGGATAAT 216
||||||.|||||.|||||..|.||.||.|.|||.||.|||...||.|||
BL00425___spp 168 -CTCAAGAAAAATCGCCGTTCTTGAAGTGAACGGAACGATTTCCGACAAT 216
BSNT_04299___ 217 GGGGAC---TCAAGCAGTCTGCTTGGTGCAGACGGATATAACCACAGAAC 263
||.|.| |||.|| |||.|..|..|.||.||.||.|||||||||.|
BL00425___spp 217 GGCGGCGCTTCAGGC---CTGTTCAGCTCTGAAGGCTACAACCACAGATC 263
BSNT_04299___ 264 GTTCTTAAAAAACCTTGAGCGCGCAAAAGATGACAAGACG--------GT 305
|||.||..|||..||||| ||||| .|.|||||| ||
BL00425___spp 264 GTTTTTGCAAATGCTTGA------AAAAG--CAAAAGACGATTCTGCCGT 305
BSNT_04299___ 306 CAAAGGTATCGTTCTGAAGGTGAATTCTCCGGGTGGCGGAGTGTATGAAA 355
.||.||.||.||||||...||.||||||||||||||||||||.||.||.|
BL00425___spp 306 AAAGGGCATTGTTCTGCGCGTCAATTCTCCGGGTGGCGGAGTATACGAGA 355
BSNT_04299___ 356 GTGCTGAAATACATAAGAAACTGGAAGAAATCAAGAAAGAAACGAAAAAA 405
|.|||||.|||||||||||.||.|||||.|||||.|||||.|||||||||
BL00425___spp 356 GCGCTGAGATACATAAGAAGCTTGAAGAGATCAAAAAAGATACGAAAAAA 405
BSNT_04299___ 406 CCGATTTACGTGTCAATGGGTTCGATGGCAGCATCAGGAGGCTATTACAT 455
|||||||||||.||||||||.||||||||.||.||.||.|||||||||||
BL00425___spp 406 CCGATTTACGTATCAATGGGATCGATGGCTGCGTCCGGCGGCTATTACAT 455
BSNT_04299___ 456 CTCAGCAGCGGCTGATAAGATTTTTGCGACACCGGAAACCCTGACCGGGT 505
.|||.|..|.||.||.||.||.|||||..|.||.||.||.|||||.||.|
BL00425___spp 456 TTCAACGCCTGCCGACAAAATCTTTGCAGCGCCTGACACGCTGACGGGTT 505
BSNT_04299___ 506 CACTCGGCGTCATTATGGAAAGCGTCAATTATTCA--AAACTTGCCGATA 553
|||||||.|||||.|||||||||.|.||.|| || ||.|||||.||.|
BL00425___spp 506 CACTCGGGGTCATCATGGAAAGCCTTAACTA--CAGCAAGCTTGCAGAGA 553
BSNT_04299___ 554 AGCTTGGCATTTCTTTTGAA--------ACGATTAAGAGCGGGGCCCATA 595
||||||| ||| || ||||||||.|||||.|....||
BL00425___spp 554 AGCTTGG-ATT-------AAAAACGGAGACGATTAAAAGCGGTGAGTTTA 595
BSNT_04299___ 596 AGGACATTATGTCTCCTTCCCGTGAGATGACGAAAGAAGAAAAAAACATC 645
|.||.||.|||||.||..|.||.||.|||||||||.||||||.|.|.|||
BL00425___spp 596 AAGATATCATGTCACCGACGCGCGATATGACGAAAAAAGAAAGAGAAATC 645
BSNT_04299___ 646 ATGCAATCGATGGTTGATAATTCGTATGAAGGCTTTGTTGATGTCATTTC 695
|||||.||.|||||.|||.|..||||.|||||.|||||.|||||.|||.|
BL00425___spp 646 ATGCAGTCAATGGTCGATGACGCGTACGAAGGGTTTGTAGATGTTATTGC 695
BSNT_04299___ 696 AAAAGGGCGCAGCATGT-CGAAAGCA-GAGGTAAAGAAAATTGCGGACGG 743
..||||||||.|||||| ||||| | ||.||.||.||||||||.|||||
BL00425___spp 696 CGAAGGGCGCGGCATGTCCGAAA--ATGACGTGAAAAAAATTGCCGACGG 743
BSNT_04299___ 744 CCGCGTGTATGACGGACGGCAGGCGAAAAAACTGAAC---CTCGTTGATG 790
.||.||.||||||||.||.|||||| ||||.|||| |||.||||||
BL00425___spp 744 ACGTGTCTATGACGGCCGCCAGGCG---AAACAGAACCATCTCATTGATG 790
BSNT_04299___ 791 AGCTTGGTTTTTATGACGATACCATTACGGCCATGAAAAAGGATCACAAG 840
||||.||.|.||||||.|||.|..|.|..||.|||||||||||.|||
BL00425___spp 791 AGCTCGGCTATTATGAAGATGCGGTCAAAGCGATGAAAAAGGACCAC--- 837
BSNT_04299___ 841 GATTTGAAAAA---------CGCCTCTGTCATTTC--TTATGAGGAA--A 877
||||| |||.||||| |.|| .|||||.||| |
BL00425___spp 838 ------AAAAACCTTGCCGGCGCATCTGT--TGTCAGCTATGAAGAATCA 879
BSNT_04299___ 878 GCTTCGGATTAGGCTCACTGTTTTCCATGGGCGCGAACAAAATGTTTAAA 927
|| |||..|.|.|||.||||||||.|||...||.||.||.|||||||||
BL00425___spp 880 GC--CGGCCTTGCCTCGCTGTTTTCAATGACTGCAAATAAGATGTTTAAA 927
BSNT_04299___ 928 AGTGAAATTGATTTTTTGAATATGAGAGAA---ATTCTATCGCAATCCGG 974
||.|||..||||||.||.||.||.|.|||| ||| ||.||||||||
BL00425___spp 928 AGCGAAGCTGATTTCTTAAACATTAAAGAAGCGATT---TCTCAATCCGG 974
BSNT_04299___ 975 TTCGCCGAGAATGATGTATCTCTATGCGAAGTAG 1008
|.|.||||||.|.||||||.|.|||||.||.|||
BL00425___spp 975 TGCACCGAGACTCATGTATTTATATGCCAAATAG 1008
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