Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04296 and BL00422

See Amino acid alignment / Visit BSNT_04296 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:26
# Commandline: needle
#    -asequence dna-align/BSNT_04296___ytfJ.1.5803.seq
#    -bsequence dna-align/BL00422___ytfJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04296___ytfJ-BL00422___ytfJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04296___ytfJ-BL00422___ytfJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04296___ytfJ
# 2: BL00422___ytfJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 485
# Identity:     347/485 (71.5%)
# Similarity:   347/485 (71.5%)
# Gaps:          55/485 (11.3%)
# Score: 1271.0
# 
#
#=======================================

BSNT_04296___      1 ATGGCAGACCATCCCATCCAAGGTTTAATGAAAACCGCAATGGAAAACTT     50
                     |||||.||.|||||.||.||||||||.|||||||||||||||||||||||
BL00422___ytf      1 ATGGCTGAACATCCAATTCAAGGTTTGATGAAAACCGCAATGGAAAACTT     50

BSNT_04296___     51 GAAGGAAATGATTGATGTTAACACCATCATCGGAGATCCAGTAGAAACGC    100
                     .||.||||||||||||||.||.|||||.|||||||||||.||.|||||.|
BL00422___ytf     51 AAAAGAAATGATTGATGTCAATACCATTATCGGAGATCCTGTGGAAACAC    100

BSNT_04296___    101 CTGATGGAAGTGTGATTTTAACTGTTTCTAAAGTTGGATTTGGATTCGCC    150
                     ||||.||.||.||.||..||||.||.||.|.|||.|||||.||.||.||.
BL00422___ytf    101 CTGACGGCAGCGTCATCCTAACCGTCTCCAGAGTGGGATTCGGCTTTGCG    150

BSNT_04296___    151 GCAGGCGGAAGCGAGTTTGGCGG----AAAGCCGGCCGAAAAGAAATCGG    196
                     ||.||||||||||||||.|||||    ||| |||||||||...|||.|| 
BL00422___ytf    151 GCTGGCGGAAGCGAGTTCGGCGGCAATAAA-CCGGCCGAATCCAAAGCG-    198

BSNT_04296___    197 AAGACGAT-GAGAC--------AAGAGAACAGAAACTTCCTTTCGGAGGC    237
                      || |||| |||||        ||.||||..|||.||.||.||.||.||.
BL00422___ytf    199 -AG-CGATGGAGACCGCGAACGAAAAGAATCGAAGCTCCCGTTTGGCGGG    246

BSNT_04296___    238 GGAAGCGGGGGCGGTGTGTCCATTACGCCGATCGCGTTTTTAATTGTCGG    287
                     ||||||||.||.||.||.||.|||||||||||.||.|||||.||||||||
BL00422___ytf    247 GGAAGCGGAGGAGGCGTATCGATTACGCCGATTGCTTTTTTGATTGTCGG    296

BSNT_04296___    288 ATCGACAGGCATCAGAATGCTTCATTTAGATGAAAATACCCATTTAATAG    337
                     |||..|||||.|.|.|.|.||.|||||.||||||||.||.||..|.||.|
BL00422___ytf    297 ATCATCAGGCGTTAAAGTACTGCATTTGGATGAAAACACGCACGTCATCG    346

BSNT_04296___    338 AGAAAATTTTAGACGCAGCCCCTCAAACACTCGAACGCATCCAGCAAATG    387
                     |.||.|||||||||.||||.||.|||||..|||||||.||.|||||.|||
BL00422___ytf    347 ATAAGATTTTAGACTCAGCTCCGCAAACGATCGAACGGATTCAGCATATG    396

BSNT_04296___    388 TTCAAGAAAA---ATAACAAGAACCAAGGCCAGGGCCAAAA-------TC    427
                     ||.|||||||   ||||..||||.|||          ||.|       ||
BL00422___ytf    397 TTTAAGAAAAACGATAAGCAGAAGCAA----------AATATGAACCGTC    436

BSNT_04296___    428 AAAACCAAATGAACAATATGA------ATTATTAA    456
                     |||||||            ||      .||.||||
BL00422___ytf    437 AAAACCA------------GACGCCTCCTTTTTAA    459


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.