Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04250 and BL00396
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_04250___phoP.1.5803.seq
# -bsequence dna-align/BL00396___phoP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04250___phoP-BL00396___phoP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04250___phoP-BL00396___phoP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04250___phoP
# 2: BL00396___phoP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 752
# Identity: 551/752 (73.3%)
# Similarity: 551/752 (73.3%)
# Gaps: 58/752 ( 7.7%)
# Score: 2021.0
#
#
#=======================================
BSNT_04250___ 1 ATGAACAAGAAAATTTTAGTTGTGGATGATGAAGAATCTATTGTTACTCT 50
||||.|||.||.||.||||||||.||||||||.|||||.||||||||.||
BL00396___pho 1 ATGAGCAAAAAGATATTAGTTGTAGATGATGAGGAATCGATTGTTACCCT 50
BSNT_04250___ 51 TTTACAGTACAATTTGGAACGGTCAGGCTATGATGTCATTACCGCCTCGG 100
|.||.|.||.||..|.||||||||.||||||.||||..|.||||||..||
BL00396___pho 51 TCTAAAATATAACCTTGAACGGTCGGGCTATCATGTGGTGACCGCCATGG 100
BSNT_04250___ 101 ATGGGGAAGAAGC--ACTCA-AAAAAGCG---GAAACAGAGAAGCCTGAT 144
|.|| |||.|| .||.| .|||.||| || |||||||||.|||
BL00396___pho 101 ACGG---AGAGGCCGGCTTATTAAAGGCGATTGA---AGAGAAGCCGGAT 144
BSNT_04250___ 145 TTGATTGTGCTTGATGTGATGCTTCCAAAATTGGACGGAATCGAAGTATG 194
.||||.|||||.|||.||||||||||.|||.|||||||.||.||||||||
BL00396___pho 145 CTGATCGTGCTCGATCTGATGCTTCCTAAAATGGACGGCATTGAAGTATG 194
BSNT_04250___ 195 CAAGCAGCTGAGACAGCAAAAACTGATGTTTCCCATTTTAATGCTGACAG 244
||||.|.||.||||||.|.||.|||||||.|||.|||||.||||||||.|
BL00396___pho 195 CAAGGAACTCAGACAGAAGAAGCTGATGTATCCGATTTTGATGCTGACCG 244
BSNT_04250___ 245 CGAAGGATGAGGAATTCGACAAAGTATTAGGGCTGGAGCTCGGTGCTGAT 294
|.||||||||.|||||.||.|||||..|.||.||.|||||.|||||.|||
BL00396___pho 245 CAAAGGATGATGAATTTGATAAAGTGCTCGGTCTCGAGCTGGGTGCCGAT 294
BSNT_04250___ 295 GATTATATGACCAAGCCGTTCAGTCCAAGGGAAGTAAATGCGAGAGTCAA 344
||.||||||||.|||||||||||.||.||.||.||.|..||.||.|||||
BL00396___pho 295 GACTATATGACAAAGCCGTTCAGCCCGAGAGAGGTGACGGCAAGGGTCAA 344
BSNT_04250___ 345 AGCGATTTTAAG-----------------GCGTTCGGAAATAGCTGCGCC 377
|||||||||||| .||||| |||.|
BL00396___pho 345 AGCGATTTTAAGAAGAACACAGACGCTGTCCGTTC------AGCCG---- 384
BSNT_04250___ 378 CTCTAGTGAGA-TGAAGAAC--GATGAAATGGAAGGCCAGATCGTAATCG 424
.|| |||| .||||||| ||| |.||||.||.|..|.||.|
BL00396___pho 385 ---GAG-GAGACGGAAGAACCGGAT------GCAGGCGAGCTGATCATAG 424
BSNT_04250___ 425 GCGATCTGAAAATCCTGCCTGATCATTATGAAGCGTACTTT---AAAGAA 471
||||.||||||||.||||||||.||||||||.|..||.||| ||.|||
BL00396___pho 425 GCGAACTGAAAATACTGCCTGAACATTATGAGGTTTATTTTCAAAACGAA 474
BSNT_04250___ 472 AGTCAGCTTGAACTGACACCGAAAGAATTCGAACTGTTGCTCTATTTAGG 521
|..||.||.|||||.|||||.|||||||||||..|..|.|||||.||
BL00396___pho 475 ---CGCCTCGAGCTGACGCCGAAGGAATTCGAACTTCTCTTATATTTGGG 521
BSNT_04250___ 522 CAGACATAAAGGCAGAGTTCTGACAAGAGACCTGCTGCTGAGCGCAGTCT 571
.||.||||||||.||.||.|||||.||||||||.||.||.|.|||.||||
BL00396___pho 522 AAGGCATAAAGGGAGGGTGCTGACGAGAGACCTTCTCCTCAACGCTGTCT 571
BSNT_04250___ 572 GGAATTATGATTTTGCCGGAGATACGAGAATTGTTGATGTGCACATCAGC 621
||||.||.||.||.||.||.||||||.|.||.||.|||||.|||||||||
BL00396___pho 572 GGAACTACGACTTCGCGGGCGATACGCGCATCGTCGATGTCCACATCAGC 621
BSNT_04250___ 622 CATCTTCGCGACAAAATTGAAAACAATACCAAAAAACCGATCTACATTAA 671
||.||||||||.||.||.|||||.|||||.|||||||||...||||||||
BL00396___pho 622 CACCTTCGCGATAAGATCGAAAAAAATACAAAAAAACCGGAATACATTAA 671
BSNT_04250___ 672 AACGATTAGGGGATTGGGGTATAAACTGGAGGAGCCAAAAATGAATGAAT 721
|||.||.||.||..|.||.||.|||.||||||||||.|||.|||||||.|
BL00396___pho 672 AACAATCAGAGGTCTTGGCTACAAAATGGAGGAGCCGAAACTGAATGATT 721
BSNT_04250___ 722 AA 723
||
BL00396___pho 722 AA 723
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