Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04247 and BL00394
See
Amino acid alignment /
Visit
BSNT_04247 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_04247___polA.1.5803.seq
# -bsequence dna-align/BL00394___polA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04247___polA-BL00394___polA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04247___polA-BL00394___polA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04247___polA
# 2: BL00394___polA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2718
# Identity: 2027/2718 (74.6%)
# Similarity: 2027/2718 (74.6%)
# Gaps: 153/2718 ( 5.6%)
# Score: 7450.5
#
#
#=======================================
BSNT_04247___ 1 ATGACGGAACGAAAAAAATTAGTGCTTGTAGACGGAAACAGTCTGGCTTA 50
|||||.|||.|||||||||||||..|.||.|||||||||||.||||||||
BL00394___pol 1 ATGACTGAAAGAAAAAAATTAGTATTGGTTGACGGAAACAGCCTGGCTTA 50
BSNT_04247___ 51 CCGGGCGTTTTTTGCATTGCCGCTGTTAAGCAATGATAAAGGTGTTCATA 100
|||.||||||||.||..||||.||..|.||||||||.|||||..|.||||
BL00394___pol 51 CCGTGCGTTTTTCGCCCTGCCTCTTCTCAGCAATGAAAAAGGGATACATA 100
BSNT_04247___ 101 CGAATGCTGTATACGGCTTTGCGATGATTTTGATGAAAATGCTTGAGGAT 150
|.||.||.||.|||||.|||.|.|.|||.||.|||||.||||||||.||.
BL00394___pol 101 CAAACGCGGTGTACGGTTTTACCACGATCTTAATGAAGATGCTTGAAGAG 150
BSNT_04247___ 151 GAAAAACCGACGCACATGCTGGTTGCGTTTGATGCCGGGAAAACAACATT 200
|||||||||||.||||||||.||.||.||||||||.||||||||.|||||
BL00394___pol 151 GAAAAACCGACCCACATGCTCGTCGCTTTTGATGCGGGGAAAACGACATT 200
BSNT_04247___ 201 TCGTCACGGCACATTTAAAGAATATAAAGGCGGCAGACAGAAAACCCCGC 250
..|.||....||.||||||||||||||||||||||||||.|||||.||||
BL00394___pol 201 CAGACATAAAACGTTTAAAGAATATAAAGGCGGCAGACAAAAAACGCCGC 250
BSNT_04247___ 251 CTGAGCTTTCCGAACAAATGCCGTTTATCCGCGAGCTGCTGGATGCCTAC 300
|.|||||.||.||.|||.||||||||||||||||||||||.||.||.||
BL00394___pol 251 CGGAGCTGTCAGAGCAATTGCCGTTTATCCGCGAGCTGCTCGACGCATA- 299
BSNT_04247___ 301 CAGA---TCAGCCGCTATGAACTGGAACAATATGAAGCGGATGATATTAT 347
.||| ||| .|.|||||.||.|||.|.||.||.||.|||||||||||
BL00394___pol 300 TAGAATCTCA--AGGTATGAGCTTGAAAACTACGAGGCCGATGATATTAT 347
BSNT_04247___ 348 CGGCACACTGGCCAAATCGGCTGAAAAAGACGGATTTGAAGTAAAGGTTT 397
||||||.||.||||||||.||.||||||||||||||||||||.|||.|||
BL00394___pol 348 CGGCACCCTTGCCAAATCAGCGGAAAAAGACGGATTTGAAGTGAAGATTT 397
BSNT_04247___ 398 TCTCAGGGGATAAGGATTTAACCCAGCTGGCAACGGACAAAACGACAGTT 447
|.||.||.||.|||||..|.||.||||||||.||.||...||||||.||.
BL00394___pol 398 TTTCCGGCGACAAGGACCTGACACAGCTGGCTACAGAAGGAACGACGGTC 447
BSNT_04247___ 448 GCCATTACGAGAAAGGGAATTACCGATGTTGAATTTTACACACCGGAGCA 497
|||||.||.|.||||||.|||||.|||||.||||..||.||.||.||.||
BL00394___pol 448 GCCATCACAAAAAAGGGCATTACAGATGTCGAATACTATACGCCTGAACA 497
BSNT_04247___ 498 TGTCAAAGAGAAATATGGGCTTACGCCTGAACAAATCATTGACATGAAGG 547
||||...||.||.||.||.|||||.||||||||.||||||||.|||||.|
BL00394___pol 498 TGTCCGGGAAAAGTACGGACTTACCCCTGAACAGATCATTGATATGAAAG 547
BSNT_04247___ 548 GTCTGATGGGCGATTCCTCAGATAATATTCCGGGTGTGCCCGGCGTCGGA 597
|.||||||||.||.||.|||||.||||||||.||.|||||.||.|||||.
BL00394___pol 548 GGCTGATGGGAGACTCGTCAGACAATATTCCAGGCGTGCCGGGAGTCGGC 597
BSNT_04247___ 598 GAAAAGACTGCGATTAAGCTTTTAAAACAATTTGATTCCGTTGAAAAGCT 647
||||||||.|||||.||||||||.|||||.||..||.|.||.||..||||
BL00394___pol 598 GAAAAGACGGCGATCAAGCTTTTGAAACAGTTCCATACAGTAGAGGAGCT 647
BSNT_04247___ 648 GCTGGAGTCCATTGACGAGGTGAGCGGAAAGAAATTGAAGGAAAAGCTTG 697
||||..|||.||.|||||.||.||||||||.|||.||||.||||||||||
BL00394___pol 648 GCTGTCGTCAATAGACGAAGTCAGCGGAAAAAAACTGAAAGAAAAGCTTG 697
BSNT_04247___ 698 AGGAGTTTAAGGATCAGGCATTGATGAGCAAGGAGCTTGCGACAATTATG 747
|.||.|||||.||.|||||.|||||||||||.|||||||||||.||||.|
BL00394___pol 698 AAGAATTTAAAGAACAGGCTTTGATGAGCAAAGAGCTTGCGACGATTACG 747
BSNT_04247___ 748 ACGGATGCTCCGATTGAGGT----ATCTGTTTCCGCCCTGGAATATCAAG 793
||.||.||.|||.||||.|| .||..|| ||||.|.||||.|||
BL00394___pol 748 ACAGAAGCGCCGCTTGAAGTCAGCCTCGATT----CCCTCGGATATGAAG 793
BSNT_04247___ 794 GCTTTAATCGTGAACAGGTCATTGCCATCTTTAAAGATCTTGGC-TTCAA 842
|.|||.|..|.|||..||||.|....||.|||||||||||.||| ||||
BL00394___pol 794 GTTTTGACAGGGAAGCGGTCGTCAAGATTTTTAAAGATCTCGGCTTTCA- 842
BSNT_04247___ 843 CACGCTTCTT-----GAACGGCTTGGAGAAGA-----CAGTG-CAGAAGC 881
||||| |||.||.||||.||||| .||.| .|||||.
BL00394___pol 843 -----TTCTTTGCTCGAAAGGATTGGCGAAGAGGCGGGAGAGAAAGAAGA 887
BSNT_04247___ 882 AGAACAGGATCAATCGTTGGAAGACATTAATG------TCAAAACAG--- 922
|||||| |||||||||.||..||| |||||||||
BL00394___pol 888 AGAACA---------GTTGGAAGAGATCGATGTCATGATCAAAACAGACA 928
BSNT_04247___ 923 TCACAGACGTGACAAGCGATATATTGGTTTCTCCATCCG----CATTTGT 968
||||.|| |||| |||.||.|..|| ||| ||.|.||
BL00394___pol 929 TCACGGA--TGAC----------TTGTTTGCGTCA-CCGGCTTCACTCGT 965
BSNT_04247___ 969 CGTTGAACAGATTGGCGATAATTATCATGAAGAGCCGATTCTCGGATTTT 1018
.||.||||||.|.|||||.||||||||.||.|.||||||.|||||.||||
BL00394___pol 966 AGTCGAACAGCTCGGCGACAATTATCACGAGGCGCCGATCCTCGGTTTTT 1015
BSNT_04247___ 1019 CGATCGTAAATGAA-ACGGGAGCTTATTTCATTCCGAAAGACACTGCCGT 1067
|||||||.||.||| || ||.||||..|||||||||.||||.||.|||||
BL00394___pol 1016 CGATCGTCAACGAACAC-GGCGCTTTCTTCATTCCGGAAGAGACGGCCGT 1064
BSNT_04247___ 1068 TGAGTCTGAGGTG-TTTAAAGAATGGGTGGAAAATGA--CGATCAGAAGA 1114
|.||||.|| .|| |||||||||||||..|||.|||| ||| |.||||
BL00394___pol 1065 TCAGTCGGA-CTGTTTTAAAGAATGGGCCGAAGATGAGTCGA--AAAAGA 1111
BSNT_04247___ 1115 AATGGGTCTTCGA--CAGCAAGCGGGCTGTTGTCGCTTTGCGCTGGCAGG 1162
|||||||.||.|| || ||.||.||.|..||||||||||||||||.||
BL00394___pol 1112 AATGGGTGTTTGATGCA--AAACGTGCGGCGGTCGCTTTGCGCTGGCGGG 1159
BSNT_04247___ 1163 GCATTGAGCTGAAAGGAGCCGAGTTTGATACG--CTCCTTGCGGCTTATA 1210
|||||||.||||||||.||.||||||| ||| ||.||||||||.||||
BL00394___pol 1160 GCATTGAACTGAAAGGCGCTGAGTTTG--ACGTTCTTCTTGCGGCCTATA 1207
BSNT_04247___ 1211 TCATCAACCCGGGCAATTCATATGACGACGTTGCGAGTGTGGCTAAGG-- 1258
|||||||||||||..|.||.||.||.||.||.||.||.||.||.||.|
BL00394___pol 1208 TCATCAACCCGGGGCACTCCTACGATGATGTGGCAAGCGTTGCGAAAGAA 1257
BSNT_04247___ 1259 -----ATTACGGCCTGCATATCGTTTCAAGTGATGAATCAGTTTATGGAA 1303
|||| ||.|||||||||...||||||.|.||.||.||||
BL00394___pol 1258 CATCAATTA-------CACATCGTTTCAGCAGATGAAGCGGTCTACGGAA 1300
BSNT_04247___ 1304 AAGGAGCAAAACGGGCAGTGCCG--TCAGAAGACGTACTGTCTGAGC--- 1348
|||||||.||||.|||.||.||| |.||||| ||||
BL00394___pol 1301 AAGGAGCGAAACAGGCGGTTCCGGATGAGAAG-----------GAGCTTG 1339
BSNT_04247___ 1349 ---ACC--TTGGCC-GAAAAGCGTTAGCGAT-TCAAAGC--CTTCGGGAA 1389
||| ||.||| ||||.|||...||||| || || ||.||.|||
BL00394___pol 1340 CCGACCATTTAGCCAGAAAGGCGAAGGCGATATC---GCTGCTGCGCGAA 1386
BSNT_04247___ 1390 AAGCTCGTTCAAGAGCTGGAAAACAACGACCAGCTTGAACTGTTTGAAGA 1439
||||||.||.|.||.||||||.|.|||||.|||||.|||||||||||||.
BL00394___pol 1387 AAGCTCCTTGATGAACTGGAAGAAAACGAGCAGCTCGAACTGTTTGAAGC 1436
BSNT_04247___ 1440 GCTGGAAATGCCTCTTGCGCTTATTCTTGGCGAAATGGAATCAACTGGCG 1489
|||.||||||||.||.||.|..|||||.||.||.||||||||.|..||.|
BL00394___pol 1437 GCTCGAAATGCCCCTCGCCCACATTCTCGGTGAGATGGAATCGATCGGTG 1486
BSNT_04247___ 1490 TCAAGGTCGATGTTGACCGTTTAAAACGGATGGGTGAAGAACTGGGTGCG 1539
||.|.||||||||.|||.|..|.|||...|||||||||||||| ||.|
BL00394___pol 1487 TCCAAGTCGATGTCGACAGACTGAAAAAAATGGGTGAAGAACT--GTCC- 1533
BSNT_04247___ 1540 AAGCTGAA-----GGAATATGAAGAAAAAATCCATGAGATTGCGGGAGAG 1584
|||.|| ||||||.||..||||||||||.|||...||.||.||.
BL00394___pol 1534 --GCTAAATTAGCGGAATACGAGAAAAAAATCCACGAGTCAGCAGGTGAA 1581
BSNT_04247___ 1585 CCGTTTAACATCAATTCTCCGAAACAGCTAGGCGTCATCTTATTTGAAAA 1634
.|.||.|||||.|||||.||.||.|||||.||.||.||.||.|||||.||
BL00394___pol 1582 ACCTTCAACATTAATTCACCAAAGCAGCTCGGTGTGATTTTGTTTGATAA 1631
BSNT_04247___ 1635 GATCGGCCTTCCTGTCGTAAAGAAAACGAAAACAGGCTATTCTACGTCTG 1684
..||||.||.||||||||.||.|||||.|||||.||||||||.||.||.|
BL00394___pol 1632 ACTCGGGCTGCCTGTCGTCAAAAAAACAAAAACGGGCTATTCAACTTCAG 1681
BSNT_04247___ 1685 CCGATGTGCTTGAAAAGCTG-GCTGACAAGCATGATATTGTCGACTATAT 1733
|||||||||||||||||||| || ||.||.||||..|||.||||..||||
BL00394___pol 1682 CCGATGTGCTTGAAAAGCTGCGC-GATAAACATGTCATTATCGAAGATAT 1730
BSNT_04247___ 1734 TTTACAGTACAGACAAATTGGCAAGCTTCAATCAACATATATCGAAGGGC 1783
..|.||.|||||.||.|||||||||||.||.||.|||||..|.|||||||
BL00394___pol 1731 CCTGCACTACAGGCAGATTGGCAAGCTCCAGTCCACATACGTAGAAGGGC 1780
BSNT_04247___ 1784 TTTTAAAGGTG-----ACGAGACCGGATTCGCATAAAGTGCACACGCGAT 1828
||||.||.||| |..||||.| .|||||||||||.||.||.|
BL00394___pol 1781 TTTTGAAAGTGATCAAAAAAGACAG-----CCATAAAGTGCATACCCGCT 1825
BSNT_04247___ 1829 TTAACCAGGCCTTAACGCAAACTGGCCGTCTCAGCTCGACTGATCCGAAC 1878
||||.||.||.|||||.||.||.||..|.||||||||.||.||||||||.
BL00394___pol 1826 TTAATCAAGCTTTAACACAGACGGGAAGGCTCAGCTCAACCGATCCGAAT 1875
BSNT_04247___ 1879 CTGCAAAACATTCCGATCAGGCTTGAGGAAGGGCGGAAAATTCGCCAAGC 1928
||||||||.||.||||||.|.||||||||.||.||.|||||.||.||.||
BL00394___pol 1876 CTGCAAAATATACCGATCCGCCTTGAGGAGGGCCGCAAAATCCGGCAGGC 1925
BSNT_04247___ 1929 TTTTGTGCCGTCTGAAAAAGACTGGCTCATTTTTGCAGCCGATTATTCAC 1978
.|||||.||.||..||||||.|||||||||.|||||.||.|||||.||||
BL00394___pol 1926 GTTTGTCCCTTCGCAAAAAGGCTGGCTCATATTTGCGGCGGATTACTCAC 1975
BSNT_04247___ 1979 AAATCGAGCTGCGGGTGCTTGCCCATATTTCAAAGGATGAAAATCTGATC 2028
|.|||||||||.||||.||.|||||.||||||||||||.|||||.||||.
BL00394___pol 1976 AGATCGAGCTGAGGGTTCTCGCCCACATTTCAAAGGATAAAAATTTGATT 2025
BSNT_04247___ 2029 GAAGCTTTTACAAATGATATGGATATTCACACGAAAACGGCAATGGATGT 2078
|||||.||.||.||.||||||||..|||||||.||||||||.|||||.||
BL00394___pol 2026 GAAGCGTTCACGAACGATATGGACGTTCACACAAAAACGGCGATGGACGT 2075
BSNT_04247___ 2079 GTTCCATGTCGCTAAGGATGAAGTGACATCTGCGATGAGACGCCAGGCGA 2128
.||.|||||..|..|.||.|||||.||..|||||||||||.|.|||||||
BL00394___pol 2076 TTTTCATGTATCAGAAGAAGAAGTCACCCCTGCGATGAGAAGGCAGGCGA 2125
BSNT_04247___ 2129 AAGCGGTCAACTTTGGGATTGTTTACGGGATCAGCGATTACGGTCTGTCA 2178
||||.|||||.||.||.||.||.|||||.||||||||.|||||..||||.
BL00394___pol 2126 AAGCAGTCAATTTCGGAATCGTCTACGGAATCAGCGACTACGGCTTGTCG 2175
BSNT_04247___ 2179 CAGAACCTCGGCATTACCCGGAAGGAAGCAGGAGCATTTATCGACCGCTA 2228
||.|||||.||.|||||..|.||||||||.|.|||.|||||.||.|||||
BL00394___pol 2176 CAAAACCTGGGAATTACAAGAAAGGAAGCGGCAGCGTTTATTGAGCGCTA 2225
BSNT_04247___ 2229 TCTGGAAAGCTTCCAAGGCGTAAAAGCGTACATGGAAGATTCAGTACAGG 2278
|.|..|.||||||||.||.||.||||..|||||||||||..|.||.||||
BL00394___pol 2226 TTTCCACAGCTTCCAGGGAGTCAAAGAATACATGGAAGAGACCGTTCAGG 2275
BSNT_04247___ 2279 AAGCGAAACAAAAAGGATACGTAACAACGC--TTATGCATCGCCGCCGCT 2326
|||||||.||...|||.||.|||||.||.| |||.|| ||..|.||.|
BL00394___pol 2276 AAGCGAAGCAGCGAGGCTATGTAACGACTCTTTTAAGC--CGGAGGCGGT 2323
BSNT_04247___ 2327 ACATCCCTGAGCTGACGAGCCGGAACTTTAATATCCGAAGTTTTGCGGAG 2376
|.||.||.||..|||||||||||||.||.|||.|.||.||.|||||.||.
BL00394___pol 2324 ATATACCGGAATTGACGAGCCGGAATTTCAATCTGCGCAGCTTTGCCGAA 2373
BSNT_04247___ 2377 CGGACGGCCATGAATACGCCGATTCAAGGAAGCGCCGCTGATATTATCAA 2426
||||||||.|||||.||.|||||.||.|||||||||||.||||||||.||
BL00394___pol 2374 CGGACGGCGATGAACACACCGATCCAGGGAAGCGCCGCAGATATTATTAA 2423
BSNT_04247___ 2427 AAAAGCCATGATTGACATGGCTGCCAAGCTGAAAGAAAAACAGTTGAAAG 2476
||||||.|||||.||||||||.|.||||||||||||||||.|..|..|.|
BL00394___pol 2424 AAAAGCGATGATCGACATGGCGGACAAGCTGAAAGAAAAAAATCTCCAGG 2473
BSNT_04247___ 2477 CAAGGCTTCTACTTCAAGTACACGATGAATTGATTTTTGAGGCGCCAAAG 2526
|.|..||.||.||.||.||.||.||.||||||||||||||.|||||..|.
BL00394___pol 2474 CCAAACTGCTGCTGCAGGTTCATGACGAATTGATTTTTGAAGCGCCTGAA 2523
BSNT_04247___ 2527 GAAGAAATTGAAATTCTTGAAAAGCTTGTTCCTGAAGTGATGGAGCATGC 2576
||.|||||..||.|.||||||||.||.|||||.|||||.|||||.|||||
BL00394___pol 2524 GATGAAATCAAAGTGCTTGAAAAACTGGTTCCGGAAGTCATGGAACATGC 2573
BSNT_04247___ 2577 GCTTGCA-TTAGATGTGCCGTTAAAGGTGGACTTTGCATCAGGCCCATCT 2625
.|||.| .|.|||||.||..|.||.|||||||..||.|||||.||.||.
BL00394___pol 2574 -ATTGGAGCTCGATGTTCCACTGAAAGTGGACTGCGCTTCAGGGCCTTCA 2622
BSNT_04247___ 2626 TGGTACGATGCGAAATAA 2643
|||||||||||.|||||.
BL00394___pol 2623 TGGTACGATGCAAAATAG 2640
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.