Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04238 and BL00390

See Amino acid alignment / Visit BSNT_04238 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:20
# Commandline: needle
#    -asequence dna-align/BSNT_04238___gapB.1.5803.seq
#    -bsequence dna-align/BL00390___gapB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04238___gapB-BL00390___gapB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04238___gapB-BL00390___gapB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04238___gapB
# 2: BL00390___gapB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1042
# Identity:     759/1042 (72.8%)
# Similarity:   759/1042 (72.8%)
# Gaps:          38/1042 ( 3.6%)
# Score: 2644.0
# 
#
#=======================================

BSNT_04238___      1 ATGAAGGTAAAAGTAGCGATCAACGGGTTTGGAAGAATCGGAAGAATGGT     50
                     |||||.||.|||||.|||||.|||||.||.||..|.|||||.||||||||
BL00390___gap      1 ATGAAAGTGAAAGTTGCGATAAACGGATTCGGCCGGATCGGCAGAATGGT     50

BSNT_04238___     51 TTTTAGAAAAGCGATGTTAGACGATCAAATTCAAGTAGTGGCCATTAACG    100
                     .|||||||||||||||.|.||.||.||.|||.|..|.|.|||.||.||.|
BL00390___gap     51 GTTTAGAAAAGCGATGCTTGATGAACAGATTGACATTGCGGCGATCAATG    100

BSNT_04238___    101 CCAGCTA--TTCCGCAGAAACGCTGGCTCATTTAATAAAGTATGACACAA    148
                     |.|||||  .||||  ||||||||.|||||||||||||||||||||||||
BL00390___gap    101 CGAGCTACCCTCCG--GAAACGCTCGCTCATTTAATAAAGTATGACACAA    148

BSNT_04238___    149 TTCACGGCAGATACGACAAAGAGGTTGTGGCTGGTGAAGATAGCCTGATC    198
                     .|||||||.|.||.||....||.||...||||||.|||||..|||||.||
BL00390___gap    149 ATCACGGCCGTTATGAACTTGATGTAAAGGCTGGAGAAGACTGCCTGTTC    198

BSNT_04238___    199 GTAAATGGAAAGAAAG----TGCTTTTG-TTAAACAGCCGTGATCCAAAA    243
                     ||.||.||.|| ||||    |||   || ..||.||| .|.||.||.||.
BL00390___gap    199 GTTAACGGTAA-AAAGGTCATGC---TGACCAATCAG-AGGGACCCTAAG    243

BSNT_04238___    244 CAGCTGCCTTGGCGGGAATATGATATTGACATAGTCGTCGAAGCAACAGG    293
                     |..||.||.|||....||||.|..||.|||||.|.|||.|||||.||.||
BL00390___gap    244 CTTCTTCCGTGGGCACAATACGGAATCGACATCGCCGTGGAAGCGACGGG    293

BSNT_04238___    294 GAAGTTTAATGCTAAAGATAAAGCGATGGGCCATATAGAAGCAGGTGCAA    343
                     |||.||.||..|.||.||.||||||...|..|||||.|||||.||.||.|
BL00390___gap    294 GAAATTCAACTCAAAGGAAAAAGCGGAAGCACATATTGAAGCCGGCGCGA    343

BSNT_04238___    344 AAAAAGTGATTTTGACCGCTCCGGGAAAAAATGAAGACGTTACCATTGTG    393
                     |||||||.||||||||.||.|||||.||||||||||||.|.||.||.|||
BL00390___gap    344 AAAAAGTTATTTTGACGGCGCCGGGCAAAAATGAAGACATCACAATCGTG    393

BSNT_04238___    394 ATGGGCGTAAATGAGGACCAATTCGACGCTGAGCGCCATGTCATTATTTC    443
                     ||||||||.||.||...|.|.||.||.||.|||||.|||...||||||||
BL00390___gap    394 ATGGGCGTCAACGAACGCGATTTTGATGCGGAGCGTCATACGATTATTTC    443

BSNT_04238___    444 AAATGCGTCATGCACGACAAATTGCCTTGCGCCTGTTGTAAAAGTGCTGG    493
                     |||.||.||.||.|||||.|||||.||.||.||.||.|.|||||||||.|
BL00390___gap    444 AAACGCTTCCTGTACGACGAATTGTCTCGCTCCAGTCGCAAAAGTGCTTG    493

BSNT_04238___    494 ATGAAGAGTTTGGCATTGAGAGCGGTCTGATGACTACAGTTCATGCGTAT    543
                     ||||.|..||.||||||||.|.|||.|||.||||.||.||.||.||.|.|
BL00390___gap    494 ATGATGCATTCGGCATTGAAAACGGCCTGGTGACAACCGTACACGCTTTT    543

BSNT_04238___    544 ACGAATGACCAAAAAAATATTGATAACCCGCACAAAGATTTGCGCCGGGC    593
                     ||.|||||.|||||||||||||||||.|||||||||||.|||.|..||||
BL00390___gap    544 ACAAATGATCAAAAAAATATTGATAATCCGCACAAAGACTTGAGGAGGGC    593

BSNT_04238___    594 GCGGGCTTGCGGTGAATCCATCATTCCAACAACAACAGGAGCGGCAAAGG    643
                     |||.||.|||||....||.||||||||.|||||.|||||.||.||.||.|
BL00390___gap    594 GCGCGCCTGCGGATCTTCGATCATTCCGACAACGACAGGCGCCGCGAAAG    643

BSNT_04238___    644 CGCTTTCGCTTGTGCTGCCGCATCTGAAAGGAAAACTTCACGGCCTCGCC    693
                     ||||.||.|||||..||||.|||.|.||.||.|.|.|.||||||||.|||
BL00390___gap    644 CGCTGTCACTTGTCATGCCCCATTTAAAGGGTAGAATGCACGGCCTGGCC    693

BSNT_04238___    694 TTGCGTGTCCCTGTTCCGAACGTCTCATTGGTTGATCTCGTTGTTGATCT    743
                     .||||.||.||.||..|.||.||.||..|.|||||.||.||.|.||||.|
BL00390___gap    694 CTGCGCGTTCCCGTCTCAAATGTGTCGCTCGTTGACCTTGTGGCTGATTT    743

BSNT_04238___    744 GAAAACGGATGTTACGGCTGAAGAAGTAAACGAGGCATTTAAACGC----    789
                     |||||..|||||.|||||.||.||..|.||.|||||.||   .|||    
BL00390___gap    744 GAAAAGCGATGTGACGGCGGAGGATATTAATGAGGCGTT---CCGCATGG    790

BSNT_04238___    790 --GCTGCCAAAACG-TCGATGTACGGTGTACTTGAT-TACTCAGATGAAC    835
                       ||.||    |.| ||.||||.|||..|..|.||| || |..|||||||
BL00390___gap    791 CGGCGGC----AGGCTCCATGTCCGGGATCATCGATGTA-TGCGATGAAC    835

BSNT_04238___    836 CGCTCGTTTCGACTGATTATAATACGAATCCGCATTCAGCGGTCATTGAC    885
                     ||||||||||..|.||||.||||||||||||..|.||.|||||.||.|||
BL00390___gap    836 CGCTCGTTTCATCCGATTTTAATACGAATCCATACTCGGCGGTGATCGAC    885

BSNT_04238___    886 GGGCTTACAACAATGGTAATGGAAGACAGGAAAGTAAAGGTGCTGGCGTG    935
                     .|.|||.|.||||||||..|.|||.||||.||.||.||.|||||.||.||
BL00390___gap    886 AGTCTTTCGACAATGGTGCTTGAAAACAGAAAGGTGAAAGTGCTTGCATG    935

BSNT_04238___    936 GTATGACAACGAATGGGGCTACTCCTGCAGAGTTGTTGATCTAATCCGCC    985
                     |||||||||.||||||||.||.||.|||||.|||||.|||.|.||    |
BL00390___gap    936 GTATGACAATGAATGGGGATATTCGTGCAGGGTTGTCGATTTGAT----C    981

BSNT_04238___    986 ATGTA-GCGG---CACGAATGAAACATCCGTCTGCTGTATAA   1023
                     |..|| ||||   ||.||||||||||.||.||.|||||||||
BL00390___gap    982 AGATACGCGGCTTCAAGAATGAAACACCCCTCAGCTGTATAA   1023


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04238 and BL00390

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
