Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04234 and BL00386
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence dna-align/BSNT_04234___dnaB.1.5803.seq
# -bsequence dna-align/BL00386___dnaB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04234___dnaB-BL00386___dnaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04234___dnaB-BL00386___dnaB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04234___dnaB
# 2: BL00386___dnaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1513
# Identity: 1013/1513 (67.0%)
# Similarity: 1013/1513 (67.0%)
# Gaps: 182/1513 (12.0%)
# Score: 3360.0
#
#
#=======================================
BSNT_04234___ 1 ATGGCTGACTATTGGAAAGATGTACTGCCTGTAGACCCGTATGTGGTTAA 50
|||..|.|.||||||||||||.|.||.|||||.||.||||||||.||.||
BL00386___dna 1 ATGAGTAATTATTGGAAAGATTTGCTTCCTGTCGATCCGTATGTTGTCAA 50
BSNT_04234___ 51 AAGCA---GATCGATGCTGCAGGATATTGACAGACAAATTATTACACAAC 97
||||| ||| |||||||||||.|.|||.|.||||||.|.||.|.|.
BL00386___dna 51 AAGCAGCGGAT---TGCTGCAGGATTTGGACCGGCAAATTGTCACGCTAT 97
BSNT_04234___ 98 TGTACCAGCCCTTAATCGGCCCTGTTGCATTC--------TCTCTTTATA 139
||||.|||||.|||||||||.||.||.|.||| ||||
BL00386___dna 98 TGTATCAGCCTTTAATCGGCTCTTTTTCGTTCAGCTTGTTTCTC------ 141
BSNT_04234___ 140 TGACATTGTGGGGAGAGCTTGAACAAAACCGTCTGTGGGGCGGAGAG-TC 188
||..|||||||||||||.||.||||||.|..|.||||| ..|.|| ||
BL00386___dna 142 --ACGCTGTGGGGAGAGCTGGAGCAAAACAGAGTCTGGGG-AAAAAGCTC 188
BSNT_04234___ 189 CACACATAGACAGCTGATGGGGATGACACAGTCCAACTTAAAAACGATCC 238
.||.||.|||||||||||||.|..||..|||.|||.|.|.||.|||||||
BL00386___dna 189 GACTCACAGACAGCTGATGGCGGCGATGCAGACCAGCCTGAAGACGATCC 238
BSNT_04234___ 239 A-TCAGGAACAGGGGAAGCTCGAGGGCATCGGATTGCTGAAAGTATATAT 287
| ||| |||.|||..|||||.|||||.||||||.||.|||||...|||||
BL00386___dna 239 ACTCA-GAAAAGGAAAAGCTTGAGGGGATCGGACTGTTGAAAACTTATAT 287
BSNT_04234___ 288 GAAAGAATCCGAGCGGCAGGAGCGCCTCTTTATATATGAACTCCTTCCGC 337
.||||||.|.|| .||.||.||..|.||||||||||||.|..||||||
BL00386___dna 288 AAAAGAAACGGA---ACACGAACGTTTGTTTATATATGAATTGATTCCGC 334
BSNT_04234___ 338 CGCTCAGACCAAATGAATTTTTTGAAGACGGAATGCTGAATGTTTTTCTG 387
||||||||||..|.||.||.|||.|.|||||.|||||||||||.||..||
BL00386___dna 335 CGCTCAGACCGGACGAGTTCTTTCAGGACGGCATGCTGAATGTCTTCTTG 384
BSNT_04234___ 388 TATAATAGAGTCGGAAAAACGAAATATCAGCAATTAAAACAATTTTTTAC 437
||.||..|.||||||||..|||..|.||||||..|.|||.|||.||||.|
BL00386___dna 385 TACAACCGCGTCGGAAAGGCGAGGTTTCAGCAGCTGAAAGAATATTTTTC 434
BSNT_04234___ 438 GCACCCGGCTATTTCAGAAGATGCGAAGGACATTACGCGGCCGTTTAATC 487
.||||||.||.||.|.|||||.||...||||||.||.||..|.||.|||.
BL00386___dna 435 CCACCCGTCTGTTCCTGAAGAAGCACGGGACATCACCCGTTCTTTCAATG 484
BSNT_04234___ 488 ACGCGTTTGAATCGCTGCAGCCGAGTGAATGGAAGCTCAC-----ATCTG 532
|.|..||||.|||..|.||||||||.|||||||||.|..| ||.||
BL00386___dna 485 AAGTTTTTGCATCTGTCCAGCCGAGCGAATGGAAGATGTCCGACGATATG 534
BSNT_04234___ 533 AT-------ATGGAG---------------GAAACG--GTAAGACTTGCC 558
|| |||||| |||..| |.||||
BL00386___dna 535 ATCGAAGCGATGGAGCTTCGCGAAGATCATGAATGGATGAAAGA------ 578
BSNT_04234___ 559 GAGGGGACCGAGTATACTTCTGTCGGACAGTCTCCGTCCTACACCATAAC 608
||| ||.||..|..|.|.|.| ||||| ||
BL00386___dna 579 -AGG-----GAATAGCCAACCGGCAG-CAGTC----------------AC 605
BSNT_04234___ 609 GGAGGATGTGTTTGATTTTGATTTGTTTTTAGCGGGACTTTCTGAGACGA 658
.||.|..|..|||||.|||.|..|||||.|.||.||..|.|||||.|||.
BL00386___dna 606 AGACGGCGCCTTTGACTTTCAACTGTTTCTCGCCGGTTTATCTGACACGC 655
BSNT_04234___ 659 TGATACCGAGAAAAGCGATGACCCAGCAGGTGCGGGACACAATCAAAAAG 708
|.||.||||||||||||.||||..|.||.|||..|||.||.||.||||||
BL00386___dna 656 TTATCCCGAGAAAAGCGCTGACAGACCAAGTGAAGGAAACGATTAAAAAG 705
BSNT_04234___ 709 CTTTCTTATCTGTACGGAATTGACCCTTTGCAAATGCAAAATGTTGTGAT 758
||..|.|.|||.|||||.||.||.||..|.||.||||||||.||.||.||
BL00386___dna 706 CTGGCCTTTCTCTACGGTATCGAACCGCTTCAGATGCAAAACGTCGTCAT 755
BSNT_04234___ 759 GAGCGCAATTGATGAGCGTGACGTCATTACGACGGAGGCATTAAGAAAAG 808
|...||..||||.||.|..||..|.||.|||||.|||||..|.|||||||
BL00386___dna 756 GTCAGCCGTTGACGAACACGATATGATCACGACAGAGGCGCTCAGAAAAG 805
BSNT_04234___ 809 CGGCGAGCGACTGGTATCAAATTGAAAGAAACGGACAGCTGCCCGATTTG 858
|||||||||||||||||||.||.||..|...|||.|.|||.||.||..|.
BL00386___dna 806 CGGCGAGCGACTGGTATCAGATCGAGCGCGGCGGCCCGCTTCCGGAACTC 855
BSNT_04234___ 859 GTGGAAAAAACACAGCCGGTGCATCTGCGTGA--AGGCGAA--------- 897
||.||.|||...||||||.||.||||.||.|| ||.||||
BL00386___dna 856 GTCGACAAAGTGCAGCCGATGAATCTCCGCGAACAGCCGAATCAACAGTC 905
BSNT_04234___ 898 ------AAACCGGCA--GAAGACGATTCTCTGGATGGGAAGCTGATTGCA 939
||| ||.|| ||||||.||| ||||.||.
BL00386___dna 906 GTCCACAAA-CGCCAAGGAAGACAATT---------------TGATCGCT 939
BSNT_04234___ 940 TTGCTGGAGGCGA-TTTCCCCGAAG-AAGCTTCTGCAGGACATTGCTGAC 987
|||||.|| ||.| |.||.|| ||| |||||.||||||||.||||..|.|
BL00386___dna 940 TTGCTTGA-GCAAGTATCGCC-AAGAAAGCTGCTGCAGGATATTGGCGGC 987
BSNT_04234___ 988 GGAACAGAGCCGTCAAAAGCTGATCTGAAGATCATAGAAGAAATTATGTT 1037
|||.|.||.||.||.|||||.||||||||.||.|||||||||||||||.|
BL00386___dna 988 GGAGCGGAACCATCCAAAGCCGATCTGAAAATTATAGAAGAAATTATGCT 1037
BSNT_04234___ 1038 CGAACAGAAGCTCGAGCCAGGCGTCACAAATGTGTTAATTTATTATGTCA 1087
.||.||.||..|.|||||.|||||||..|||||..|.|||||||||||||
BL00386___dna 1038 TGACCAAAAATTAGAGCCCGGCGTCATCAATGTTCTGATTTATTATGTCA 1087
BSNT_04234___ 1088 TGCTGAAAACCGACATGAAGCTGTCCAAAAACTATATCCAAAAAATCGCT 1137
|||||||||||||.||||||||.||.|||||.||.|..||||||||||||
BL00386___dna 1088 TGCTGAAAACCGATATGAAGCTTTCGAAAAATTACACGCAAAAAATCGCT 1137
BSNT_04234___ 1138 TCGCATTGGGCACGCAAAAAGGTAAAAACGGTCAGGGAAGCGATGAAGCT 1187
||.||.|||||..|.|||||.||....|||||.||.||.||.||||||||
BL00386___dna 1138 TCCCACTGGGCCAGAAAAAAAGTTCGTACGGTTAGAGAGGCCATGAAGCT 1187
BSNT_04234___ 1188 CGCAATAGAAGAAAACCGCCAGTATCTTGAATGGGCTGAAGGAAAAACAA 1237
.||.|.|||||||||||||||.||||||||||||||.|||||.||.|.||
BL00386___dna 1188 TGCGAAAGAAGAAAACCGCCAATATCTTGAATGGGCGGAAGGGAAGAAAA 1237
BSNT_04234___ 1238 AGTCTTCGAAACGAAACCAAAAAGTGATTCGTGAAGAAAAGCTTCCTGAT 1287
||.|||| .||.|||.|.|||||.||..|.|||||||||||.||||||
BL00386___dna 1238 AGACTTC---CCGGAACAAGAAAGTCATCAGAGAAGAAAAGCTGCCTGAT 1284
BSNT_04234___ 1288 TG-------------------GATGACAGAAAA-----GGAAACAGCGTC 1313
|| |.||||||.||| ||||||||.|
BL00386___dna 1285 TGGCTTCGGGAAAGTGACGATGCTGACAGCAAACCGCTGGAAACAGAG-- 1332
BSNT_04234___ 1314 TGATTCAGAATCCGGACAGCAGAAGCTGCATCC---GCAGGATTTGGAAG 1360
||| ||.|...|||||.|| |.|||.||| |
BL00386___dna 1333 -----CAG----------GCTGGTCCTGCAACCAGAGAAGGCTTT----G 1363
BSNT_04234___ 1361 AACAGAAGAAA---AAGATGATGGAAGAAATGCAAAAACTGAAAAAATAC 1407
|.|||.||||| |||.||.|.||||||.|..|||||||||||||..|.
BL00386___dna 1364 ACCAGCAGAAACAGAAGCTGCTCGAAGAAGTAAAAAAACTGAAAAACCAT 1413
BSNT_04234___ 1408 TCTGC-CTATTAA 1419
||.|| || ||||
BL00386___dna 1414 TCCGCTCT-TTAA 1425
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