Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04229 and BL00384
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence dna-align/BSNT_04229___ytxB.1.5803.seq
# -bsequence dna-align/BL00384___ytxB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04229___ytxB-BL00384___ytxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04229___ytxB-BL00384___ytxB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04229___ytxB
# 2: BL00384___ytxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 701
# Identity: 406/701 (57.9%)
# Similarity: 406/701 (57.9%)
# Gaps: 127/701 (18.1%)
# Score: 952.5
#
#
#=======================================
BSNT_04229___ 1 ATGAAACGAAAAA------CGGCTGTCAAATGG------CTGGCAGTGCT 38
||| ||||||| .||| ||||||| .|.||.||..|
BL00384___ytx 1 ATG---CGAAAAAGAACCTTGGC---CAAATGGACGGTAATCGCCGTAAT 44
BSNT_04229___ 39 TGCAGGTGCTGGTTTACTCTATTGGGGAA-ACAAAACGTATTTGAATGTA 87
.||.|..||.|| .||||.|..||| .|.||| ||..|||||.|
BL00384___ytx 45 CGCGGCGGCCGG-----ACTATGGCTGAATGCGAAA--TACCTGAATCT- 86
BSNT_04229___ 88 TCGCCGAAAG--------AAATCAGGGTATGGGTATTGTCGTTCGGAGTC 129
.|| |.||.||.|.|.|.||.||.||.||.||..|.
BL00384___ytx 87 -------GAGCCCTGCTCATATAAGAGAAGGCGTCTTATCCTTTGGGATT 129
BSNT_04229___ 130 TTTGCACCTCTGATGTTTATCGGGATATCCATCGTCAGGCCACTTGTTTT 179
||.||.||..||||.|.||||||..|||..||..||.|||| |||||
BL00384___ytx 130 TTCGCCCCGTTGATCTATATCGGACTATTGATGATCCGGCC----GTTTT 175
BSNT_04229___ 180 AT-----TTCCGGTGTCTGTTATT-----TCAATAGCTGGCGGACTTGCG 219
| ||||.|..||.||| || || ||| |||||.||.||.
BL00384___ytx 176 -TGCTGCTTCCTGCTTCCGTT-TTCGCCGTC---AGC-GGCGGCCTCGCA 219
BSNT_04229___ 220 TTTGGCCCGCTTCTCGGCACGCTTTATACGTTATTCGGTTCGATGTGCGC 269
||.||.|||||..|.|||.|..|.|||.|.||..|||||.||....|||.
BL00384___ytx 220 TTCGGTCCGCTGTTTGGCTCTTTGTATTCTTTTATCGGTGCGGCAGGCGG 269
BSNT_04229___ 270 TTCAGCTGTTTCGTT---TTTTGC-----GGCCGGTTTGTTTTCGGCGAA 311
|.||..|.|.||.|| |.|||| ||| ||||||.|
BL00384___ytx 270 TGCATTTTTATCATTCGCTCTTGCATACAGGC----------TCGGCGGA 309
BSNT_04229___ 312 AA-----AGAACGGGCATTAC---GAAAGGCTTGA-AGCCATACAGAAGC 352
.| ||.| |||..| ||| |||.|| |||| |.|.||.||
BL00384___ytx 310 TACTTTCAGCA----CATGCCGCTGAA--GCTCGACAGCC-TGCGGACGC 352
BSNT_04229___ 353 AAATGGAGGATAACGGATTTTTCTATATCTTTCTTTTGAGAATCCTGCCG 402
...||..|.|.|||||.|||||||..||.||.||.|||||..|...||||
BL00384___ytx 353 TTTTGCGGAAAAACGGCTTTTTCTGCATTTTGCTCTTGAGGCTGGCGCCG 402
BSNT_04229___ 403 ATCAATTTTGATTTCGTCAGCTATGCGGCAGGCCTTTCCAATGTCAAAGC 452
||..|||||||....||||||||||||||||||.|||||||.||.||..|
BL00384___ytx 403 ATTCATTTTGACGCGGTCAGCTATGCGGCAGGCGTTTCCAAAGTGAAGCC 452
BSNT_04229___ 453 GCTGCCGTATTTTGC---GGCAACGGCTGTGGGAATCATCCCTGGGACGA 499
.|||.|| ||||| |||.|||||.|.|||.|||||.||.||.||.|
BL00384___ytx 453 TCTGTCG---TTTGCCCTGGCGACGGCCGCGGGTATCATACCGGGCACCA 499
BSNT_04229___ 500 TTGCGCTTAATGTGCT-GGGTGCGAGCTTTTTGGCTGGCAATCTGCC--- 545
||....|.||.||||| |||| |.|||.|.|||.|.|||.| |..||
BL00384___ytx 500 TTATTTTAAACGTGCTCGGGT-CAAGCCTCTTGACCGGCGA-CATCCTAG 547
BSNT_04229___ 546 CGCTTTCTTTATGGT----GCTCGCTTTGTATATCGTGTTTATCTCACTG 591
||.||.| ||| || |||..|.||..|..|.||.||..||.||
BL00384___ytx 548 CGATTGC-----GGTTACAGC-CGCAATTTACCTGATATTCATTACAGTG 591
BSNT_04229___ 592 CCGTTCATCTTCAGAAAGAAAATGCAAAACTTGTTCCAAGAATCAAATTA 641
|||.|..|.||||||||.|||.||| |...|.|||..| ||||
BL00384___ytx 592 CCGCTTTTGTTCAGAAAAAAAGTGC---AGGCGCTCCTCG------ATTA 632
BSNT_04229___ 642 A 642
|
BL00384___ytx 633 A 633
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