Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04220 and BL00380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence dna-align/BSNT_04220___lytS.1.5803.seq
# -bsequence dna-align/BL00380___lytS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04220___lytS-BL00380___lytS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04220___lytS-BL00380___lytS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04220___lytS
# 2: BL00380___lytS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1818
# Identity: 1302/1818 (71.6%)
# Similarity: 1302/1818 (71.6%)
# Gaps: 69/1818 ( 3.8%)
# Score: 4366.0
#
#
#=======================================
BSNT_04220___ 1 ATGATTCATTTAATGATTATGATGCTGGAGAGAGTGGGGATTATTGTTAT 50
|||.|.||..|.|||||||||||||||||||||||||||||.||.||.||
BL00380___lyt 1 ATGGTCCAACTCATGATTATGATGCTGGAGAGAGTGGGGATCATCGTCAT 50
BSNT_04220___ 51 ATTAGGGTTCATTCTCGCCCATACGAAACTTTTCAGACAAGC-TCTTCAG 99
..|.||.||.||..|.|||||||.|||..|.|||.|.| ||| .||.|||
BL00380___lyt 51 TCTGGGCTTTATGTTGGCCCATATGAAGGTGTTCCGTC-AGCACCTACAG 99
BSNT_04220___ 100 AATCAGGACGGCTATAAAGGAAAAGCGA-TTTTAATTTCTATTTTTTCTC 148
.|||.|||.||.||| ||||..|||.|| ||.|.||.|.||||||||| |
BL00380___lyt 100 CATCCGGAAGGGTAT-AAGGGCAAGGGAGTTCTCATCTTTATTTTTTC-C 147
BSNT_04220___ 149 TT-TTCAGCATCATCAGCAATTATACAGGCATCGAAATTC---AAAGAAA 194
|| |||||||||||||||||.|||||||||||.|||||.| |..|..|
BL00380___lyt 148 TTGTTCAGCATCATCAGCAACTATACAGGCATTGAAATCCGGGAGCGCGA 197
BSNT_04220___ 195 TATGATTGTAAACAATGACTGGGTGTTTACGATAGATCCATCAGGCTCTA 244
||||.|.||||||||||||.|.||..|.||.||.||.|||.||||.|
BL00380___lyt 198 ---GATTTTGAACAATGACTGGATTTTCGCAATCGACCCGTCAAGCTCGA 244
BSNT_04220___ 245 TCGCGAATACCCGTATTTTGGGCGTGGAAATCGGGGGCCTTCTCGGAGGT 294
|.||.|||||..|.|||.|.|||||.||||||||.|||.|..|||||||.
BL00380___lyt 245 TTGCCAATACGAGAATTCTCGGCGTCGAAATCGGCGGCTTGATCGGAGGG 294
BSNT_04220___ 295 CCGTTTGTAGGGGCCGGGATCGGCATACTTGCGGGCCTGCATCGTTTTTC 344
||||||||.||.||.||..||||..|.||..|.|||.|.||.||||||||
BL00380___lyt 295 CCGTTTGTCGGAGCGGGTGTCGGACTGCTCTCAGGCATTCACCGTTTTTC 344
BSNT_04220___ 345 ACTCGGTGGCAGCACGGCTTTAAGCTGTGCCGTATCATCTATTTTAGCGG 394
|||.||.||.|..||||||||.|||||.||.||.||.||..|..|.||.|
BL00380___lyt 345 ACTGGGAGGGACGACGGCTTTGAGCTGCGCGGTTTCTTCACTGCTGGCAG 394
BSNT_04220___ 395 GTGTTCTTGCAGGCTTGATCGGCAGGTATTTTACGAAGCGATATCGAATG 444
||||..||||.||.|..||||||||.|.|||.|.|||.||..|.|..|||
BL00380___lyt 395 GTGTCATTGCGGGTTATATCGGCAGCTTTTTCAGGAATCGGCACCAGATG 444
BSNT_04220___ 445 CCGACACCGCGCATCGCCGCTCTTGTGGGAATCGGCATGGAGTCACTGCA 494
..|||||||||..|.||||||||||.|||.||..|.||||||...|||||
BL00380___lyt 445 GTGACACCGCGGGTAGCCGCTCTTGCGGGCATTTGTATGGAGGGCCTGCA 494
BSNT_04220___ 495 AATGATCATTATTTTGCTGATGGCAAAGCCGTTCAG--TGA--CGCTTGG 540
.|||.|.||.|||.|..||.|.|||||.||| ||| ||| |.|||
BL00380___lyt 495 GATGCTTATGATTCTCGTGCTTGCAAAACCG--CAGGCTGAGGCACTT-- 540
BSNT_04220___ 541 GAGCTTG-TCAGCATGATCGGAATTCCGATGATACTCATCAATGGAACAG 589
|.||||| |||| ||||||||.|||||.|||||..|..||||.||.||.|
BL00380___lyt 541 GCGCTTGTTCAG-ATGATCGGCATTCCAATGATGATTGTCAACGGGACGG 589
BSNT_04220___ 590 GCAGTTTTATTTTTCTGTCTATTATTCAAGCGATCATTCGCAAGGAAGAA 639
||||.|||||||||||.||.||.|||||..|.||.||.|||||.||.|||
BL00380___lyt 590 GCAGCTTTATTTTTCTATCGATCATTCAGTCTATTATCCGCAAAGAGGAA 639
BSNT_04220___ 640 CAGGCAAGAGCTCTCGAAACGCATCGAGTGCTGACGATTGCTGATCAGAC 689
|||||..|.||..|..|.||.|||...||..|..||||.||.||||||||
BL00380___lyt 640 CAGGCGCGGGCCGTTCAGACCCATAAGGTATTTTCGATAGCGGATCAGAC 689
BSNT_04220___ 690 ACTTCCATTTTTTCGCCAAGGATTAAATGAAAACTCCTGTAAAAGTGTAG 739
.|||||.|||||.||||..|||.|.|||||..|.|||||.||||| .|
BL00380___lyt 690 GCTTCCTTTTTTCCGCCGGGGACTGAATGAGGATTCCTGCAAAAG---CG 736
BSNT_04220___ 740 CGGCT---ATTATCCATAAGC-TGACAGGAACAGATGCGGTGTCTCTCAC 785
|.||| |||||.|| ..|| |||||||.||.|||||.||.||..|.||
BL00380___lyt 737 CCGCTCTCATTATACA-CCGCATGACAGGGACGGATGCCGTATCGATTAC 785
BSNT_04220___ 786 TGATAAAGAAAAGATCCTTGCGCATGTCGGTGCGGGAATGGATCACCACA 835
.||||.|||.||.||.||.||.||||||||.|..|||...|||||.||.|
BL00380___lyt 786 GGATAGAGAGAACATTCTCGCTCATGTCGGAGATGGAGCAGATCATCATA 835
BSNT_04220___ 836 TCCCATCGAAAAGTTTGATCACCGGCCTGTCCAAAAAGGTGATTAAAACA 885
|.||.|||||||.|.||||||||||..|.||.|||||.||.|||.||||.
BL00380___lyt 836 TTCCTTCGAAAAATCTGATCACCGGTTTATCGAAAAAAGTCATTCAAACC 885
BSNT_04220___ 886 GGGCATATTATGAAGGCGATTTCACAGGAAGAGATTGAATGCACGCA--- 932
||..|..|.|||||.|.||..||.|..||.||.||.||.||..||||
BL00380___lyt 886 GGAAAGGTCATGAAAGTGAAGTCGCGCGATGAAATCGAGTGTGCGCACCG 935
BSNT_04220___ 933 -TGCTGAATGCCCTTTGCACGCTGCAATTGTCCTGCCGCTGACATCGAAC 981
|.| ||.||..||||.||.||.||.||.||||||||....||.|||
BL00380___lyt 936 TTCC----TGTCCGCTGCAGGCGGCGATCGTACTGCCGCTCTTCTCCAAC 981
BSNT_04220___ 982 GGCAATACAATCGGCACCTTAAAAATGTACTTTAAAAGCCCGGCAGGCCT 1031
.||.|.|||||||||||..|.||..|||||||.||...||||.|.||.||
BL00380___lyt 982 CGCGAAACAATCGGCACGCTGAAGCTGTACTTCAAGCACCCGTCCGGTCT 1031
BSNT_04220___ 1032 GAGTCAGGTAGA-GGAGGAACTTGCCGAGGGGCTGGCCATGCTGTTTTCG 1080
.|..|..|| || |||.||.||.|||||.|||||.||||||||.|||||.
BL00380___lyt 1032 TAACCGTGT-GACGGAAGAGCTGGCCGAAGGGCTTGCCATGCTTTTTTCC 1080
BSNT_04220___ 1081 ACACAGCTTGAGCTTGGGGAAGCAGAGCTGCAAAGCAAACTTCTCAAGGA 1130
||.|||||.||.||.||.||.||.||||||||||||||.|||.|.||.||
BL00380___lyt 1081 ACTCAGCTAGAACTCGGTGAGGCTGAGCTGCAAAGCAAGCTTTTGAAAGA 1130
BSNT_04220___ 1131 TGCTGAAATTAAAGCGCTTCAAGCACAGGTGAATCCGCATTTTTTATTTA 1180
|||.|||||.||.|||||||||||.|||||.||||||||.||||||||||
BL00380___lyt 1131 TGCCGAAATCAAGGCGCTTCAAGCGCAGGTCAATCCGCACTTTTTATTTA 1180
BSNT_04220___ 1181 ATGCGATCAACACGATTTCTGCGTTATGCCGTACAGATGTTGAAAAAACC 1230
||||.|||.|.|||||||||||..|.|||.|.||||||...||||||||.
BL00380___lyt 1181 ATGCCATCCATACGATTTCTGCTCTGTGCAGGACAGATCCGGAAAAAACG 1230
BSNT_04220___ 1231 CGTAAGCTCCTATTGCAGCTCAGTGTTTATTTTCGTTCAAACCTTCAAGG 1280
||.||.||.||.||||||||.||.||||||||||||||.||.||.||.||
BL00380___lyt 1231 CGAAAACTTCTCTTGCAGCTGAGCGTTTATTTTCGTTCCAATCTGCAGGG 1280
BSNT_04220___ 1281 AGCGAGACAGCTGCTGATCCCGCTCTCAAAGGAGCTGAACCATCTTAACG 1330
|||.||.||||||.||||.|||||.|||||.||||||||||||||..|.|
BL00380___lyt 1281 AGCCAGGCAGCTGATGATTCCGCTTTCAAAAGAGCTGAACCATCTGGAAG 1330
BSNT_04220___ 1331 CCTATTTGTCATTAGAACAGGCGCGTTTTCCCGGGAAATATAAAATTGAG 1380
|||||||.|||||.||.|||||.||.|||||.||.||.|||.|.|||||.
BL00380___lyt 1331 CCTATTTATCATTGGAGCAGGCCCGATTTCCGGGCAAGTATCATATTGAT 1380
BSNT_04220___ 1381 CTTAATATCGACAGCAGACTGGAGCAGATTGAAATCCCTCCGTTTGTTTT 1430
.||.|||||||...|.|.||.||..|.||.|||||||||||.|||.|.||
BL00380___lyt 1381 TTTCATATCGAGGACGGCCTTGAAAATATGGAAATCCCTCCTTTTATCTT 1430
BSNT_04220___ 1431 GCAGGTGCTTGTCGAGAACGCGCTTCGGCACGCGTTTCCGAAAAAACAAG 1480
||||.||||.||.||.||.||||||||.||.||.|||||||.|||||||.
BL00380___lyt 1431 GCAGCTGCTCGTTGAAAATGCGCTTCGCCATGCATTTCCGAGAAAACAAA 1480
BSNT_04220___ 1481 ACATGTGCAAGGTTACAGT-----CTGTGTCTTATCTGATGATGCATCCG 1525
|..|.||||.|||.|.||| |||||....|.|.| ||.| .||
BL00380___lyt 1481 AGGTATGCACGGTAAAAGTATCCGCTGTGAGAGAGCGG--GACG---GCG 1525
BSNT_04220___ 1526 TCTATATGAAGGTGGCGGATAACGGACGCGGAATTCCGCCGGACGT-CTT 1574
|.|..|||||||||.|.||.|||||..|.||||||...|||||..| |||
BL00380___lyt 1526 TTTTGATGAAGGTGTCAGACAACGGCAGGGGAATTAATCCGGAGATGCTT 1575
BSNT_04220___ 1575 GCCGG--AACTGGGAAAGAAACCGTTTCCGTCTAAGGAGGGAACCGGTAC 1622
|| |.|||||..||...||....||.||.|||||.||||..||.||
BL00380___lyt 1576 ---GGACAGCTGGGGCAGGCGCCCGCCCCTTCAAAGGAAGGAAATGGGAC 1622
BSNT_04220___ 1623 AGCGCTTTATAACCTAAATCAGCGGCTGATCGGTTTATTCGGACAGCAGG 1672
.||||||||.||..|.||.||||||||.|.||||||.|||||.||.||||
BL00380___lyt 1623 GGCGCTTTACAATGTGAACCAGCGGCTCACCGGTTTGTTCGGGCACCAGG 1672
BSNT_04220___ 1673 CTGCACTGCATATCAGCAGTGAGGTTCATAAAGGGACAGAGGTCTCCTTT 1722
||||.|||||.||...|||.||..||.|||||||.||||||.|.||| ||
BL00380___lyt 1673 CTGCTCTGCAGATTGCCAGCGAACTTGATAAAGGAACAGAGATATCC-TT 1721
BSNT_04220___ 1723 CAAG-TGCCAATGCAA--CAGATGAAAGAG-GGAGAAGA-ACATGCTCAG 1767
|||| |.||..|.||| | ||||||| ||.|||.| |.|||||||.
BL00380___lyt 1722 CAAGATTCCTTTTCAAACC----GAAAGAGAGGGGAACAGAGATGCTCAA 1767
BSNT_04220___ 1768 GGTGTTAATAGTTGA--- 1782
|||.|||||.||.||
BL00380___lyt 1768 GGTATTAATCGTGGATGA 1785
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