Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04319 and BL00374

See Amino acid alignment / Visit BSNT_04319 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:27
# Commandline: needle
#    -asequence dna-align/BSNT_04319___rpsD.1.5803.seq
#    -bsequence dna-align/BL00374___rpsD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04319___rpsD-BL00374___rpsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04319___rpsD-BL00374___rpsD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04319___rpsD
# 2: BL00374___rpsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 609
# Identity:     518/609 (85.1%)
# Similarity:   518/609 (85.1%)
# Gaps:          12/609 ( 2.0%)
# Score: 2230.0
# 
#
#=======================================

BSNT_04319___      1 ATGGCTCGCTATACAGGTCCATCTTGGAAACTGTCCCGCCGTCTAGGAAT     50
                     |||||||||||||||||||||...||||||.|.|||||||||.||||.||
BL00374___rps      1 ATGGCTCGCTATACAGGTCCAAGCTGGAAATTATCCCGCCGTTTAGGCAT     50

BSNT_04319___     51 CTCTCTTAGCGGTACAGGAAAAGAATTAGAAAAACGCCCTTACGCTCCAG    100
                     ||||.|.||||||||.||.|||||||||||||||||.||||||||.||||
BL00374___rps     51 CTCTTTAAGCGGTACGGGTAAAGAATTAGAAAAACGTCCTTACGCACCAG    100

BSNT_04319___    101 GTCCACACGGCCCAGGACAACGTAAAAAATTATCAGAATACGGTTTGCAA    150
                     ||||.|||||.||.|||||.|||||||||.||||||||||.|||||||||
BL00374___rps    101 GTCCTCACGGTCCGGGACAGCGTAAAAAACTATCAGAATATGGTTTGCAA    150

BSNT_04319___    151 TTGCAAGAAAAGCAAAAGCTTCGTCACATGTACGGTGTAAACGAACGTCA    200
                     |||||||||||||||||||||||.||.|||||||||||.||||||||.||
BL00374___rps    151 TTGCAAGAAAAGCAAAAGCTTCGCCATATGTACGGTGTGAACGAACGCCA    200

BSNT_04319___    201 ATTCCGCA--CTTTGTTTGACAAAGCTGGCAAACTAGCTGGTAAACACGG    248
                     ||||||||  |||  |||||||||||||..|||.|.||.|||||||||||
BL00374___rps    201 ATTCCGCAACCTT--TTTGACAAAGCTGCGAAAATGGCCGGTAAACACGG    248

BSNT_04319___    249 TGAAAACTTCATGATTCTTTTAGATTCTCGTCTTGATAACGTTGTGTACA    298
                     |||||||||||||||||||.|.||.||.||||||||.|||.|.||.|||.
BL00374___rps    249 TGAAAACTTCATGATTCTTCTTGAGTCACGTCTTGACAACATCGTTTACC    298

BSNT_04319___    299 AGCTAGGTTTAGCACGTACTCGCCGTCAAGCTCGCCAATTGGTTAACCAC    348
                     ..||.||..|.||.||.||||||||.|||||.|||||||||||.||||||
BL00374___rps    299 GTCTTGGCCTGGCGCGCACTCGCCGCCAAGCACGCCAATTGGTAAACCAC    348

BSNT_04319___    349 GGTCACATTCTTGTAGACGGAAGCCGCGTTGACATCCCGTCTTACCTAGT    398
                     ||||||.|||||||.||||||||||||||||||||.||||||||||.|||
BL00374___rps    349 GGTCACGTTCTTGTTGACGGAAGCCGCGTTGACATTCCGTCTTACCAAGT    398

BSNT_04319___    399 GAAACCTGGTCAAACAAT----CGGTGTTCGCGAAAAATCAAGAAACCTT    444
                     .||||||||.|||||.||    |    ||||.||||||||...|||||||
BL00374___rps    399 TAAACCTGGCCAAACGATTTCAC----TTCGTGAAAAATCTCAAAACCTT    444

BSNT_04319___    445 TCTATCATCAAAGAATCTGTTGAAGTGAACAACTTCGTTCCTGAATACCT    494
                     |||.||.|.||||||.|.|||||||||||||||||.||||||||||||||
BL00374___rps    445 TCTGTCGTTAAAGAAGCGGTTGAAGTGAACAACTTTGTTCCTGAATACCT    494

BSNT_04319___    495 TACTTTCGACGCTGAAAAGCTTGAAGGTACTTTCACTCGTCTTCCTGAGC    544
                     .|||||.|||||||||||||||||||||.|..|.|||||.|||||.||||
BL00374___rps    495 GACTTTTGACGCTGAAAAGCTTGAAGGTTCACTAACTCGCCTTCCAGAGC    544

BSNT_04319___    545 GTTCTGAACTTGCTCCGGAAATTAACGAAGCGCTTATCGTTGAGTTCTAC    594
                     |||||||.|||.||.|.||.||||||||||||||.|||||||||||||||
BL00374___rps    545 GTTCTGAGCTTCCTGCTGAGATTAACGAAGCGCTGATCGTTGAGTTCTAC    594

BSNT_04319___    595 TCTCGTTAA    603
                     |||||||||
BL00374___rps    595 TCTCGTTAA    603


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