Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04319 and BL00374
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:27
# Commandline: needle
# -asequence dna-align/BSNT_04319___rpsD.1.5803.seq
# -bsequence dna-align/BL00374___rpsD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04319___rpsD-BL00374___rpsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04319___rpsD-BL00374___rpsD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04319___rpsD
# 2: BL00374___rpsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 609
# Identity: 518/609 (85.1%)
# Similarity: 518/609 (85.1%)
# Gaps: 12/609 ( 2.0%)
# Score: 2230.0
#
#
#=======================================
BSNT_04319___ 1 ATGGCTCGCTATACAGGTCCATCTTGGAAACTGTCCCGCCGTCTAGGAAT 50
|||||||||||||||||||||...||||||.|.|||||||||.||||.||
BL00374___rps 1 ATGGCTCGCTATACAGGTCCAAGCTGGAAATTATCCCGCCGTTTAGGCAT 50
BSNT_04319___ 51 CTCTCTTAGCGGTACAGGAAAAGAATTAGAAAAACGCCCTTACGCTCCAG 100
||||.|.||||||||.||.|||||||||||||||||.||||||||.||||
BL00374___rps 51 CTCTTTAAGCGGTACGGGTAAAGAATTAGAAAAACGTCCTTACGCACCAG 100
BSNT_04319___ 101 GTCCACACGGCCCAGGACAACGTAAAAAATTATCAGAATACGGTTTGCAA 150
||||.|||||.||.|||||.|||||||||.||||||||||.|||||||||
BL00374___rps 101 GTCCTCACGGTCCGGGACAGCGTAAAAAACTATCAGAATATGGTTTGCAA 150
BSNT_04319___ 151 TTGCAAGAAAAGCAAAAGCTTCGTCACATGTACGGTGTAAACGAACGTCA 200
|||||||||||||||||||||||.||.|||||||||||.||||||||.||
BL00374___rps 151 TTGCAAGAAAAGCAAAAGCTTCGCCATATGTACGGTGTGAACGAACGCCA 200
BSNT_04319___ 201 ATTCCGCA--CTTTGTTTGACAAAGCTGGCAAACTAGCTGGTAAACACGG 248
|||||||| ||| |||||||||||||..|||.|.||.|||||||||||
BL00374___rps 201 ATTCCGCAACCTT--TTTGACAAAGCTGCGAAAATGGCCGGTAAACACGG 248
BSNT_04319___ 249 TGAAAACTTCATGATTCTTTTAGATTCTCGTCTTGATAACGTTGTGTACA 298
|||||||||||||||||||.|.||.||.||||||||.|||.|.||.|||.
BL00374___rps 249 TGAAAACTTCATGATTCTTCTTGAGTCACGTCTTGACAACATCGTTTACC 298
BSNT_04319___ 299 AGCTAGGTTTAGCACGTACTCGCCGTCAAGCTCGCCAATTGGTTAACCAC 348
..||.||..|.||.||.||||||||.|||||.|||||||||||.||||||
BL00374___rps 299 GTCTTGGCCTGGCGCGCACTCGCCGCCAAGCACGCCAATTGGTAAACCAC 348
BSNT_04319___ 349 GGTCACATTCTTGTAGACGGAAGCCGCGTTGACATCCCGTCTTACCTAGT 398
||||||.|||||||.||||||||||||||||||||.||||||||||.|||
BL00374___rps 349 GGTCACGTTCTTGTTGACGGAAGCCGCGTTGACATTCCGTCTTACCAAGT 398
BSNT_04319___ 399 GAAACCTGGTCAAACAAT----CGGTGTTCGCGAAAAATCAAGAAACCTT 444
.||||||||.|||||.|| | ||||.||||||||...|||||||
BL00374___rps 399 TAAACCTGGCCAAACGATTTCAC----TTCGTGAAAAATCTCAAAACCTT 444
BSNT_04319___ 445 TCTATCATCAAAGAATCTGTTGAAGTGAACAACTTCGTTCCTGAATACCT 494
|||.||.|.||||||.|.|||||||||||||||||.||||||||||||||
BL00374___rps 445 TCTGTCGTTAAAGAAGCGGTTGAAGTGAACAACTTTGTTCCTGAATACCT 494
BSNT_04319___ 495 TACTTTCGACGCTGAAAAGCTTGAAGGTACTTTCACTCGTCTTCCTGAGC 544
.|||||.|||||||||||||||||||||.|..|.|||||.|||||.||||
BL00374___rps 495 GACTTTTGACGCTGAAAAGCTTGAAGGTTCACTAACTCGCCTTCCAGAGC 544
BSNT_04319___ 545 GTTCTGAACTTGCTCCGGAAATTAACGAAGCGCTTATCGTTGAGTTCTAC 594
|||||||.|||.||.|.||.||||||||||||||.|||||||||||||||
BL00374___rps 545 GTTCTGAGCTTCCTGCTGAGATTAACGAAGCGCTGATCGTTGAGTTCTAC 594
BSNT_04319___ 595 TCTCGTTAA 603
|||||||||
BL00374___rps 595 TCTCGTTAA 603
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