Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04313 and BL00372

See Amino acid alignment / Visit BSNT_04313 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:27
# Commandline: needle
#    -asequence dna-align/BSNT_04313___hisJ.1.5803.seq
#    -bsequence dna-align/BL00372___hisJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04313___hisJ-BL00372___hisJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04313___hisJ-BL00372___hisJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04313___hisJ
# 2: BL00372___hisJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 865
# Identity:     573/865 (66.2%)
# Similarity:   573/865 (66.2%)
# Gaps:         110/865 (12.7%)
# Score: 1770.5
# 
#
#=======================================

BSNT_04313___      1 ATGCAAAAGCGAGACGGACATATTCACACACCATTTTGCCCTCACGGCTC     50
                     ||||..||.||||||||.|||.||||..|.||.|||||.||.|||||.||
BL00372___his      1 ATGCTGAAACGAGACGGTCATGTTCATTCTCCCTTTTGTCCGCACGGATC     50

BSNT_04313___     51 CAATGACACACTCAGACAATATGCAGAAGAA----GCCTTAAAAAAAGGG     96
                     .||.|||..|.|||||.|.|||..|||||||    ||    ||||||||.
BL00372___his     51 AAAAGACGAATTCAGATATTATATAGAAGAATTGTGC----AAAAAAGGC     96

BSNT_04313___     97 TTCGAATCGATTACTTTTACCGAACACGCCCCATTGCCGCCCTCTTTTAC    146
                     |||.||||..|..|.|||||.||.|||||.||..|.|||||.||.||||.
BL00372___his     97 TTCCAATCCGTATCCTTTACTGAGCACGCGCCGCTTCCGCCTTCATTTAT    146

BSNT_04313___    147 CGATCCCACGCCGCTGAAAGACAGCGCGATGGCG-----CAAGCTTCTTT    191
                     .|||||.||.|||..||||||||||||.|||.||     |.|||     |
BL00372___his    147 TGATCCGACTCCGGAGAAAGACAGCGCCATGCCGATCTCCCAGC-----T    191

BSNT_04313___    192 GGAACGCTATATTCA-----TGAAATTTCCGGATTAAAAAAAGAATATCG    236
                     ||..|||||||||.|     |||     |||.|.|.||..|||||||..|
BL00372___his    192 GGGCCGCTATATTGAACGGCTGA-----CCGAACTGAAGGAAGAATACAG    236

BSNT_04313___    237 CGGACAGCTTAGCATACGGACAGGGCTTGAAGTCGATTATAT---CGC--    281
                     .|||||||||..|||...||..||.|||||||||||||||||   |||  
BL00372___his    237 AGGACAGCTTGACATTTTGATCGGTCTTGAAGTCGATTATATCCGCGCCT    286

BSNT_04313___    282 -TGAATTTGAAGACGAAA--TTACATTATTCCTAGA-CACATACGGGCCA    327
                      ||||..|||| ||||||  |       ||.||.|| || .|||||..||
BL00372___his    287 TTGAACATGAA-ACGAAAGCT-------TTTCTCGATCA-GTACGGCACA    327

BSNT_04313___    328 TATTTAGATGACAGCATCTTATCCGTTCATTTTTTGCGCACAGACTCTTC    377
                     .||.|.||.|||||||||.|.||||||||||||||||...|.|..|||||
BL00372___his    328 CATCTTGACGACAGCATCCTGTCCGTTCATTTTTTGCCGGCTGGATCTTC    377

BSNT_04313___    378 CTATCTATGCCTTGATTATGACG----AGCATACCTTCAAAG-AGCTGAT    422
                     .||..|.||.|||||.||.||.|    |||.|   |||  || |||||||
BL00372___his    378 ATACATCTGTCTTGACTACGATGAAAAAGCGT---TTC--AGCAGCTGAT    422

BSNT_04313___    423 TTCAGCCTG---CGGAAGCATTGAAGC-GGTATAT---GAACAATATTAC    465
                        .|.|||   |||.||||..| ||| |||.|||   |...|.|||.||
BL00372___his    423 ---CGACTGCTACGGCAGCACAG-AGCAGGTTTATCTCGCCTATTATGAC    468

BSNT_04313___    466 CGGAGTATCTATTCTTCCATTGTAGCATCTCTCGGCGTTTATAAGCCAAA    515
                       || .||||||||||||||||||.||.|..|.||.|..|.|||||||||
BL00372___his    469 --GA-AATCTATTCTTCCATTGTATCACCGTTGGGAGCATTTAAGCCAAA    515

BSNT_04313___    516 AAGAGTCGGTCACATCACACTCGTCCAAAAATTCATCAAGCTGTTTCCAT    565
                     |.||.||||.||||||||.||.|...|||||||..|.|||||||||||.|
BL00372___his    516 ACGAATCGGCCACATCACGCTTGCGAAAAAATTTGTGAAGCTGTTTCCGT    565

BSNT_04313___    566 ACAGCATGTC----------AGAACATATTCGCGGCCTCGTTTCCCTGTG    605
                     |.|..|||||          ||||.||     |||.|||.|   ||||| 
BL00372___his    566 ATACGATGTCGGAAAGCGTTAGAAAAT-----CGGTCTCCT---CCTGT-    606

BSNT_04313___    606 CCTGAATGCCATTGAAG----AAAA--CGGAATGGAGCTCGACTTCAATA    649
                      |||.|      |||||    ||||  ||||.|.||.||.|||||.||||
BL00372___his    607 -CTGGA------TGAAGCCGCAAAACGCGGACTTGAACTTGACTTTAATA    649

BSNT_04313___    650 CTTCCGGCTTAAGAAAAACTTACGCTGGCGGTATTTATATCGAGGATTGG    699
                     |..|||||.|..|.||..||||.||.|||....|.|||||.||.||.|||
BL00372___his    650 CGGCCGGCCTCCGCAAGCCTTATGCAGGCAACGTCTATATGGAAGAATGG    699

BSNT_04313___    700 ATGCTGAATGAAGCGAAGCAAAAGAAGATCCCGCTTGTGTTTGGGTCAGA    749
                     |||.|.||.||||||.|.|||||.||.|||||||||||.||||||||.||
BL00372___his    700 ATGATAAAAGAAGCGGAACAAAAAAACATCCCGCTTGTCTTTGGGTCTGA    749

BSNT_04313___    750 TGCCCATCAAGCGGGAGATGTCGGATATGCGTATGAGGCGTTTTTGGAAC    799
                     .|||||.|||||.|..||||.|||||.||..||.|| .|.||||..||.|
BL00372___his    750 CGCCCACCAAGCAGAGGATGCCGGATTTGGTTACGA-ACATTTTGAGAGC    798

BSNT_04313___    800 GG---TGCTAG----    807
                     .|   ||.||.    
BL00372___his    799 CGCTTTGTTAAATAA    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04313 and BL00372

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
