Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04223 and BL00360

See Amino acid alignment / Visit BSNT_04223 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:19
# Commandline: needle
#    -asequence dna-align/BSNT_04223___ysaA.1.5803.seq
#    -bsequence dna-align/BL00360___ysaA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04223___ysaA-BL00360___ysaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04223___ysaA-BL00360___ysaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04223___ysaA
# 2: BL00360___ysaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 888
# Identity:     603/888 (67.9%)
# Similarity:   603/888 (67.9%)
# Gaps:         132/888 (14.9%)
# Score: 2193.5
# 
#
#=======================================

BSNT_04223___      1 ATGAGCCTTTTGGCAGAAAGATTTGAATCTGAAGCAGAGGAGAAGATCAT     50
                                                                     ||
BL00360___ysa      1 ------------------------------------------------AT      2

BSNT_04223___     51 GAAAGCCGTATTTTTTGATTTAGATGATACACTACTTTGGGACGAAAAAA    100
                     ||||||||||||||||||||||||.||||||.|.||.|||||.|||||||
BL00360___ysa      3 GAAAGCCGTATTTTTTGATTTAGACGATACATTGCTCTGGGATGAAAAAA     52

BSNT_04223___    101 GCGTCAGAACAACATTTGCAGAAACTTG-CTTACAGGCGGAGAAAAAATA    149
                     |||||||.|||.|||||.|..||||.|| |||| |.||.||..|||||||
BL00360___ysa     53 GCGTCAGCACAGCATTTTCCAAAACGTGCCTTA-AAGCTGAAGAAAAATA    101

BSNT_04223___    150 TGG---CCTTGACCCTGAGGAATTCGAAGCAGCTGTTCGCGAAGCAGCGA    196
                     .||   ||.||   |.||.|||||.||||||||.||.||||||||||||.
BL00360___ysa    102 CGGAATCCATG---CGGAAGAATTTGAAGCAGCCGTGCGCGAAGCAGCGC    148

BSNT_04223___    197 GAGAATTGTACATGTCATATGAGACGTATCCATATACAGTGATGATCGGC    246
                     ||.|..|.||||||||.|||||.||.||||||||.||.||.|||||||||
BL00360___ysa    149 GAAAGCTTTACATGTCTTATGAAACATATCCATACACCGTCATGATCGGC    198

BSNT_04223___    247 ATTAACCCGTTTGAAGGACTGTGGTCCAATTTCTCAGAGCCAATCAGTGA    296
                     ||.|||||.|||||||||||||||||.||.|||...|||||.|||||.||
BL00360___ysa    199 ATCAACCCATTTGAAGGACTGTGGTCAAACTTCAGCGAGCCGATCAGCGA    248

BSNT_04223___    297 AGGTTTTCAAAAGCTGAACAAGATTGTGCCGGAGTACAGAAGAAATGCAT    346
                     |||.||||||||.||||||||.|||||.||.||.|||||||||||.||||
BL00360___ysa    249 AGGGTTTCAAAAACTGAACAAAATTGTTCCCGAATACAGAAGAAACGCAT    298

BSNT_04223___    347 GGACAAACGGACTGAAAGCGCTTGGGATCGATGATCCTGCATATGGCGAA    396
                     |||||||||||.||||.|||.||||.|||||.|||||.||.|..||.|||
BL00360___ysa    299 GGACAAACGGATTGAAGGCGTTTGGCATCGACGATCCCGCCTTCGGGGAA    348

BSNT_04223___    397 TACTTGGGAGAGTTTTTTGCGGCAGAGCGCAGAAAACGCCCGTTTGTATA    446
                     .|..|.||.||.|.|||||||||||.||||.||||..||||.|||||.||
BL00360___ysa    349 GAACTCGGCGAATATTTTGCGGCAGTGCGCCGAAAGAGCCCTTTTGTTTA    398

BSNT_04223___    447 TGATGAAACATTTGCTGTACTCGATCAATTAAAAGG-CAAGTATGA-ATT    494
                     |||.|||||||||||.||..|.|||.|..|.||||| .||||| || .||
BL00360___ysa    399 TGAAGAAACATTTGCCGTTTTAGATGAGCTGAAAGGAAAAGTA-GAGCTT    447

BSNT_04223___    495 ATTGCTTT---TGACAAATGGCGATCCGAGTCTGCAAAAGGAGAAGCTTG    541
                         ||||   |||||||.|||||||||||.|||||.||.||.|||.|.|
BL00360___ysa    448 ----CTTTTGCTGACAAACGGCGATCCGAGCCTGCAGAAAGAAAAGTTGG    493

BSNT_04223___    542 CCGGCGTACCTGAGCTTGCTCCTTACTTCAATGAAATCGTCATCTCGGGC    591
                     |.||||||||.||.|||||||||||.||.|||||||||||.||.||.||.
BL00360___ysa    494 CAGGCGTACCGGAACTTGCTCCTTATTTTAATGAAATCGTGATTTCCGGT    543

BSNT_04223___    592 GCATTCGGCAAGGGCAAGCCGGATGTTTCA---ATTTTTGAACACTGCCT    638
                     |.|||.||.||.||.|||||   ||.|.||   ||.||||||||||||||
BL00360___ysa    544 GAATTTGGAAAAGGAAAGCC---TGATCCAAGCATATTTGAACACTGCCT    590

BSNT_04223___    639 TAAGCT------GATGAATATTGAAAATGACGATGCCATCATGGTCGGCG    682
                     .|..||      .||||      .|||.||.||||||.|.||||||||.|
BL00360___ysa    591 CACCCTCCTCGGCATGA------CAAAAGATGATGCCGTGATGGTCGGAG    634

BSNT_04223___    683 ATAATTTAAATACTGATATTTTAGGCGCTTCAAGAGCCGGAATCAAAACC    732
                     |.||.||.||.||.||.|||.|.||.|||||.|||||.||.|||.|||||
BL00360___ysa    635 ACAACTTGAACACCGACATTCTCGGGGCTTCCAGAGCAGGCATCCAAACC    684

BSNT_04223___    733 GTTTGGATCAACCGGACGGATAAGAAAAACGAAACTGACGTAACGCCTGA    782
                     ||.|||.|||||||.|..|..||.||.||.||||||||.||..|.|||||
BL00360___ysa    685 GTCTGGGTCAACCGCAAAGGCAAAAAGAATGAAACTGATGTTGCACCTGA    734

BSNT_04223___    783 TTACATCATCAGCAGCCTTCAT------GATTTGTTTCCTATAT------    820
                     |.||...||||||      |||      ||..||||  |.||||      
BL00360___ysa    735 TCACGAAATCAGC------CATTTAAGCGAACTGTT--CGATATCCTCCG    776

BSNT_04223___    821 --------------------TAGAGAAATAA-------    831
                                         || ||.||.||       
BL00360___ysa    777 CGGACAAGCAGCGGACAAGCTA-AGCAAAAAAGCATGA    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04223 and BL00360

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
